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From: <bjo...@us...> - 2009-09-07 23:12:06
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Revision: 2061
http://obi.svn.sourceforge.net/obi/?rev=2061&view=rev
Author: bjoernpeters
Date: 2009-09-07 23:11:48 +0000 (Mon, 07 Sep 2009)
Log Message:
-----------
Added empty file that will hold the investigation-use-case.owl
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
trunk/src/ontology/branches/obi.repository.template
Added Paths:
-----------
trunk/src/ontology/branches/investigation-use-case.owl
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From: <bjo...@us...> - 2009-09-07 22:48:17
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Revision: 2060
http://obi.svn.sourceforge.net/obi/?rev=2060&view=rev
Author: bjoernpeters
Date: 2009-09-07 22:48:10 +0000 (Mon, 07 Sep 2009)
Log Message:
-----------
merged 'disease' and 'disease iedb' into one term.
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <bjo...@us...> - 2009-09-07 22:25:49
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Revision: 2059
http://obi.svn.sourceforge.net/obi/?rev=2059&view=rev
Author: bjoernpeters
Date: 2009-09-07 22:25:37 +0000 (Mon, 07 Sep 2009)
Log Message:
-----------
removed ONTIE relations that are not necessary and (has process location, has output), renamed 'results from' to 'process is result of' to disambiguate with OBI relation of the same name.
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <bjo...@us...> - 2009-09-07 20:16:27
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Revision: 2058
http://obi.svn.sourceforge.net/obi/?rev=2058&view=rev
Author: bjoernpeters
Date: 2009-09-07 20:16:12 +0000 (Mon, 07 Sep 2009)
Log Message:
-----------
removed 'has output' relation (introduced in ONTIE merge), and updated textual definitions 'is specified input / output' to be in sync with inverses.
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <bjo...@us...> - 2009-09-04 22:08:39
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Revision: 2057
http://obi.svn.sourceforge.net/obi/?rev=2057&view=rev
Author: bjoernpeters
Date: 2009-09-04 22:08:31 +0000 (Fri, 04 Sep 2009)
Log Message:
-----------
Modified Paths:
--------------
trunk/docs/papers/release/Release-Manuscript-Master.doc
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From: <mco...@us...> - 2009-09-01 18:12:07
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Revision: 2056
http://obi.svn.sourceforge.net/obi/?rev=2056&view=rev
Author: mcourtot
Date: 2009-09-01 18:11:59 +0000 (Tue, 01 Sep 2009)
Log Message:
-----------
removed duplicates
Modified Paths:
--------------
trunk/src/ontology/branches/externalDerived.owl
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From: <jam...@us...> - 2009-09-01 12:25:49
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Revision: 2055
http://obi.svn.sourceforge.net/obi/?rev=2055&view=rev
Author: jamesmalone
Date: 2009-09-01 12:21:46 +0000 (Tue, 01 Sep 2009)
Log Message:
-----------
some obsolete roles moved
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <al...@us...> - 2009-09-01 05:25:55
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Revision: 2054
http://obi.svn.sourceforge.net/obi/?rev=2054&view=rev
Author: alanr
Date: 2009-09-01 05:25:48 +0000 (Tue, 01 Sep 2009)
Log Message:
-----------
minor fixes
Modified Paths:
--------------
trunk/src/ontology/branches/external.owl
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From: <jen...@us...> - 2009-08-31 18:29:10
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Revision: 2053
http://obi.svn.sourceforge.net/obi/?rev=2053&view=rev
Author: jenfostel
Date: 2009-08-31 18:28:59 +0000 (Mon, 31 Aug 2009)
Log Message:
-----------
edits to manuscript to remove plurals and fix use case #3.
Modified Paths:
--------------
trunk/docs/papers/release/Release-Manuscript-Master.doc
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From: <al...@us...> - 2009-08-31 17:25:28
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Revision: 2052
http://obi.svn.sourceforge.net/obi/?rev=2052&view=rev
Author: alanr
Date: 2009-08-31 17:25:18 +0000 (Mon, 31 Aug 2009)
Log Message:
-----------
remove duplicate http://purl.org/obo/owl/CL#CL_0000842
Modified Paths:
--------------
trunk/src/ontology/branches/external.owl
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From: <al...@us...> - 2009-08-29 22:12:59
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Revision: 2051
http://obi.svn.sourceforge.net/obi/?rev=2051&view=rev
Author: alanr
Date: 2009-08-29 22:12:52 +0000 (Sat, 29 Aug 2009)
Log Message:
-----------
fixed obsoleting of subclasses of obsolete_to_be_fixed
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <al...@us...> - 2009-08-29 21:50:56
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Revision: 2050
http://obi.svn.sourceforge.net/obi/?rev=2050&view=rev
Author: alanr
Date: 2009-08-29 21:50:50 +0000 (Sat, 29 Aug 2009)
Log Message:
-----------
gene expression subclassof biological process
Modified Paths:
--------------
trunk/src/ontology/branches/external.owl
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From: <al...@us...> - 2009-08-29 20:37:21
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Revision: 2049
http://obi.svn.sourceforge.net/obi/?rev=2049&view=rev
Author: alanr
Date: 2009-08-29 20:37:14 +0000 (Sat, 29 Aug 2009)
Log Message:
-----------
add ../external/iao/iao-main.owl?forceReadOnly=true
Modified Paths:
--------------
trunk/src/ontology/branches/obi.repository.template
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From: <al...@us...> - 2009-08-28 23:21:14
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Revision: 2048
http://obi.svn.sourceforge.net/obi/?rev=2048&view=rev
Author: alanr
Date: 2009-08-28 23:21:08 +0000 (Fri, 28 Aug 2009)
Log Message:
-----------
For r2047
exported by p4
Added Paths:
-----------
trunk/src/ontology/branches/inferred-superclasses.owl
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From: <al...@us...> - 2009-08-28 04:41:47
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Revision: 2047
http://obi.svn.sourceforge.net/obi/?rev=2047&view=rev
Author: alanr
Date: 2009-08-28 04:41:36 +0000 (Fri, 28 Aug 2009)
Log Message:
-----------
merge ontie
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <mco...@us...> - 2009-08-27 21:56:13
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Revision: 2046
http://obi.svn.sourceforge.net/obi/?rev=2046&view=rev
Author: mcourtot
Date: 2009-08-27 21:56:05 +0000 (Thu, 27 Aug 2009)
Log Message:
-----------
updated URI for OBI_1110207
removed pro placeholder (replaced by http://purl.org/obo/owl/PRO#PRO_000001018)
removed restriction on obsolete OBI_1110009
Modified Paths:
--------------
branches/ontie-dev/src/ontology/modules/ONTIE/ONTIE.owl
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From: <al...@us...> - 2009-08-27 21:19:47
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Revision: 2045
http://obi.svn.sourceforge.net/obi/?rev=2045&view=rev
Author: alanr
Date: 2009-08-27 21:19:40 +0000 (Thu, 27 Aug 2009)
Log Message:
-----------
add ontie placeholder -> http://purl.org/obo/owl/PRO#PRO_000001018
Modified Paths:
--------------
trunk/src/ontology/branches/external.owl
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From: <al...@us...> - 2009-08-27 21:08:49
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Revision: 2044
http://obi.svn.sourceforge.net/obi/?rev=2044&view=rev
Author: alanr
Date: 2009-08-27 21:08:42 +0000 (Thu, 27 Aug 2009)
Log Message:
-----------
including ontie terms
Modified Paths:
--------------
trunk/src/ontology/branches/external.owl
trunk/src/ontology/branches/externalDerived.owl
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From: <bjo...@us...> - 2009-08-27 17:56:16
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Revision: 2043
http://obi.svn.sourceforge.net/obi/?rev=2043&view=rev
Author: bjoernpeters
Date: 2009-08-27 17:56:10 +0000 (Thu, 27 Aug 2009)
Log Message:
-----------
Review completed by Bjoern - done with Discussion. Allyson next in line.
Modified Paths:
--------------
trunk/docs/papers/release/Release-Manuscript-Master.doc
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/csort.MYI
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/misc.MYD
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/misc.MYI
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/refs.MYI
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/refs_ext.MYI
trunk/docs/papers/release/release.Data/rdb/csort.MYD
trunk/docs/papers/release/release.Data/rdb/csort.MYI
trunk/docs/papers/release/release.Data/rdb/jterms.MYD
trunk/docs/papers/release/release.Data/rdb/jterms.MYI
trunk/docs/papers/release/release.Data/rdb/misc.MYD
trunk/docs/papers/release/release.Data/rdb/misc.MYI
trunk/docs/papers/release/release.Data/rdb/refs.MYD
trunk/docs/papers/release/release.Data/rdb/refs.MYI
trunk/docs/papers/release/release.Data/rdb/refs_ext.MYD
trunk/docs/papers/release/release.Data/rdb/refs_ext.MYI
trunk/docs/papers/release/release.Data/rdb/terms.MYD
trunk/docs/papers/release/release.Data/rdb/terms.MYI
trunk/docs/papers/release/release.enl
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From: <par...@us...> - 2009-08-27 09:21:51
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Revision: 2042
http://obi.svn.sourceforge.net/obi/?rev=2042&view=rev
Author: parkinso
Date: 2009-08-27 09:21:36 +0000 (Thu, 27 Aug 2009)
Log Message:
-----------
added produce data function to glucometer, classified as instrument
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <bjo...@us...> - 2009-08-27 05:22:48
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Revision: 2041
http://obi.svn.sourceforge.net/obi/?rev=2041&view=rev
Author: bjoernpeters
Date: 2009-08-27 05:22:37 +0000 (Thu, 27 Aug 2009)
Log Message:
-----------
added tracker items to comments in manuscript; updated term table
Modified Paths:
--------------
trunk/docs/papers/release/OBITerm-ids.xls
trunk/docs/papers/release/Release-Manuscript-Master.doc
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From: <bjo...@us...> - 2009-08-27 04:59:30
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Revision: 2040
http://obi.svn.sourceforge.net/obi/?rev=2040&view=rev
Author: bjoernpeters
Date: 2009-08-27 04:59:22 +0000 (Thu, 27 Aug 2009)
Log Message:
-----------
endnote being stupid.
Modified Paths:
--------------
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/csort.MYI
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/refs.MYD
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/refs.MYI
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/refs_ext.MYD
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/refs_ext.MYI
trunk/docs/papers/release/release.Data/Trash/Trash.enl
trunk/docs/papers/release/release.Data/rdb/csort.MYD
trunk/docs/papers/release/release.Data/rdb/csort.MYI
trunk/docs/papers/release/release.Data/rdb/misc.MYD
trunk/docs/papers/release/release.Data/rdb/misc.MYI
trunk/docs/papers/release/release.enl
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From: <bjo...@us...> - 2009-08-27 04:56:16
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Revision: 2039
http://obi.svn.sourceforge.net/obi/?rev=2039&view=rev
Author: bjoernpeters
Date: 2009-08-27 04:56:10 +0000 (Thu, 27 Aug 2009)
Log Message:
-----------
revised PRS use case (ISA-tools)
Modified Paths:
--------------
trunk/docs/papers/release/Release-Manuscript-Master.doc
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/csort.MYI
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/jterms.MYD
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/jterms.MYI
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/misc.MYD
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/misc.MYI
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/refs.MYD
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/refs.MYI
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/refs_ext.MYD
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/refs_ext.MYI
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/terms.MYD
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/terms.MYI
trunk/docs/papers/release/release.Data/rdb/csort.MYD
trunk/docs/papers/release/release.Data/rdb/csort.MYI
trunk/docs/papers/release/release.Data/rdb/jterms.MYD
trunk/docs/papers/release/release.Data/rdb/jterms.MYI
trunk/docs/papers/release/release.Data/rdb/misc.MYD
trunk/docs/papers/release/release.Data/rdb/misc.MYI
trunk/docs/papers/release/release.Data/rdb/refs.MYD
trunk/docs/papers/release/release.Data/rdb/refs.MYI
trunk/docs/papers/release/release.Data/rdb/refs_ext.MYD
trunk/docs/papers/release/release.Data/rdb/refs_ext.MYI
trunk/docs/papers/release/release.Data/rdb/terms.MYD
trunk/docs/papers/release/release.Data/rdb/terms.MYI
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From: <bjo...@us...> - 2009-08-27 02:52:17
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Revision: 2038
http://obi.svn.sourceforge.net/obi/?rev=2038&view=rev
Author: bjoernpeters
Date: 2009-08-27 02:52:09 +0000 (Thu, 27 Aug 2009)
Log Message:
-----------
obsoleted duplicate mass spectrometry term
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <bjo...@us...> - 2009-08-27 02:31:16
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Revision: 2037
http://obi.svn.sourceforge.net/obi/?rev=2037&view=rev
Author: bjoernpeters
Date: 2009-08-27 02:31:08 +0000 (Thu, 27 Aug 2009)
Log Message:
-----------
added glucometer
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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