| 164 |
Update Hardklor/Bullseye to latest version |
post v2.0 |
open |
Kaipo
|
2014-06-12
|
2014-06-19
|
|
|
| 150 |
mzid output from tide-search is very slow |
post v2.0 |
open |
Kaipo
|
2014-05-28
|
2014-05-28
|
|
|
| 146 |
Fix xlink-predict-peptide-ions |
post v2.0 |
open |
sjoemac
|
2014-05-06
|
2014-05-06
|
|
|
| 143 |
Read fasta files in gz format |
post v2.0 |
open |
Kaipo
|
2014-05-06
|
2014-06-19
|
|
|
| 128 |
Tide memory management |
post v2.0 |
open |
William S Noble
|
2014-04-11
|
2015-07-31
|
crux-users |
|
| 127 |
Modify PinWriter to use DelimitedFileWriter |
Percolator |
open |
Alice Cheng
|
2014-04-03
|
2015-03-19
|
|
|
| 121 |
Pass digestion rules instead of enzyme names |
post v2.0 |
open |
Kaipo
|
2014-02-27
|
2015-08-20
|
|
|
| 115 |
Include filename information in PSMs when calling crux percolator with multiple search files |
post v2.0 |
open |
sjoemac
|
2014-02-02
|
2015-06-11
|
High priority |
|
| 107 |
Support re-analysis of separate data set with Percolator |
Percolator |
open |
|
2014-01-23
|
2014-01-23
|
|
|
| 105 |
hardklor output: crux hardklor different than crux bullseye |
post v2.0 |
open |
sjoemac
|
2014-01-23
|
2014-03-27
|
|
|
| 104 |
exact-p-val on high resolution data |
p-values |
open |
Jeff Howbert
|
2014-01-23
|
2014-04-23
|
|
|
| 103 |
Tide core dump from string operation |
post v2.0 |
open |
William S Noble
|
2014-01-22
|
2014-03-20
|
|
|
| 100 |
Implement amino acid-dependent neutral losses |
post v2.0 |
open |
William S Noble
|
2014-01-15
|
2014-01-15
|
|
|
| 97 |
protein terminal modification |
post v2.0 |
open |
Kaipo
|
2014-01-09
|
2016-04-08
|
High priority |
|
| 93 |
Specify whether a modification impacts digestion or cross-linking |
post v2.0 |
open |
Kaipo
|
2013-12-23
|
2013-12-23
|
|
|
| 90 |
Bug in percolator rank |
MacOS |
open |
William S Noble
|
2013-12-18
|
2014-04-02
|
|
|
| 87 |
Fix calibrate-scores |
post v2.0 |
open |
Kaipo
|
2013-12-16
|
2013-12-16
|
|
|
| 78 |
Code coverage |
Testing |
open |
Kaipo
|
2013-12-12
|
2015-02-12
|
|
|
| 70 |
Peptide-centric option |
post v2.0 |
open |
Alex Hu
|
2013-11-27
|
2013-11-27
|
|
|
| 69 |
Tide theoretical spectra are limited to charge 2+ fragments |
Tide |
open |
Kaipo
|
2013-11-27
|
2014-04-20
|
|
|
| 66 |
Comet seg fault on MacOS |
MacOS |
open |
William S Noble
|
2013-11-23
|
2014-09-11
|
|
|
| 55 |
Add Tide options to eliminate peaks around the precursor |
Tide |
open |
Kaipo
|
2013-11-21
|
2014-04-20
|
|
|
| 22 |
Rename header files |
post v2.0 |
open |
Kaipo
|
2013-09-12
|
2015-02-12
|
|
|
| 12 |
Fix handling of modifications |
post v2.0 |
open |
Kaipo
|
2013-08-22
|
2013-08-22
|
|
|
| 11 |
Add iTRAQ feature to tide. |
post v2.0 |
open |
Alex Hu
|
2013-08-22
|
2013-08-22
|
|
|
