| 342 |
Percolator got worse |
post v2.0 |
open |
Kaipo
|
2015-10-06
|
2015-10-06
|
|
|
| 341 |
Report scores of individual matches in search-for-xlinks |
post v2.0 |
open |
sjoemac
|
2015-10-02
|
2015-10-28
|
|
|
| 339 |
Implement Waltzthoeni approach to cross-link FDR estimation |
post v2.0 |
open |
sjoemac
|
2015-10-01
|
2016-06-24
|
High priority |
|
| 333 |
tide-index should treat asterisks as stop codons |
post v2.0 |
open |
Kaipo
|
2015-09-25
|
2015-09-25
|
|
|
| 332 |
Error creating file in tide-search |
post v2.0 |
open |
Kaipo
|
2015-09-25
|
2015-09-25
|
|
|
| 330 |
Make assign-confidence capable of parsing search-for-xlinks output files |
post v2.0 |
open |
Kaipo
|
2015-09-19
|
2015-09-19
|
|
|
| 325 |
Report number of candidates by category |
Crux v2.0 |
open |
sjoemac
|
2015-09-18
|
2015-09-18
|
|
|
| 324 |
Report detailed timing info from search-for-matches |
post v2.0 |
open |
sjoemac
|
2015-09-18
|
2015-09-18
|
|
|
| 323 |
Document static mods for search-for-xlinks |
Crux v2.0 |
open |
sjoemac
|
2015-09-18
|
2015-09-18
|
|
|
| 322 |
Disallow cross-links between identical peptides |
post v2.0 |
open |
sjoemac
|
2015-09-18
|
2015-09-18
|
|
|
| 321 |
Add print-search-progress option to search-for-xlinks |
post v2.0 |
open |
sjoemac
|
2015-09-18
|
2015-09-18
|
|
|
| 316 |
Update Comet docs |
post v2.0 |
open |
William S Noble
|
2015-09-03
|
2015-09-03
|
|
|
| 314 |
Missing enumeration values in case |
post v2.0 |
open |
Kaipo
|
2015-08-28
|
2015-10-28
|
Quick |
|
| 308 |
Seg fault from spectral-counts |
Crux v2.2 |
open |
Kaipo
|
2015-08-21
|
2015-10-09
|
Quick |
|
| 306 |
Implement parameter synonyms |
post v2.0 |
open |
Kaipo
|
2015-08-20
|
2015-09-11
|
|
|
| 305 |
Handle z-line problem in .ms2 files more gracefully |
post v2.0 |
open |
William S Noble
|
2015-08-20
|
2015-08-21
|
|
|
| 303 |
Retain mass/modification information from search results in Percolator |
Crux v2.2 |
open |
Kaipo
|
2015-08-07
|
2015-08-07
|
High priority, crux-users |
|
| 300 |
Skip output matches/spectrum column instead of writing zeros |
Crux v2.2 |
open |
Kaipo
|
2015-07-14
|
2015-07-14
|
crux-users |
|
| 299 |
Fix Percolator behavior when unable to convert to Crux objects |
Crux v2.2 |
open |
Kaipo
|
2015-07-09
|
2015-07-09
|
High priority, crux-users |
|
| 297 |
Add support for MGF input to Comet |
post v2.0 |
open |
Kaipo
|
2015-07-07
|
2015-07-07
|
crux-users |
|
| 292 |
Tide does not support amino acid U |
Crux v2.0 |
open |
William S Noble
|
2015-07-03
|
2015-07-07
|
|
|
| 291 |
Contact server on startup |
Crux v2.2 |
open |
Kaipo
|
2015-07-01
|
2016-07-27
|
High priority |
|
| 285 |
All crux commands should start by outputting the Crux version number |
post v2.0 |
open |
sjoemac
|
2015-06-12
|
2015-10-09
|
|
|
| 274 |
tide-search results are incorrect when exact-pvalue is used with non-tsv formats |
Crux v2.2 |
open |
Kaipo
|
2015-05-12
|
2015-11-06
|
High priority |
|
| 272 |
Group parameter file options by command |
post v2.0 |
open |
Kaipo
|
2015-05-07
|
2015-05-07
|
|
|
