#55 Add Tide options to eliminate peaks around the precursor

[William S Noble]

Tide does not exclude from the observed spectrum peaks close to the m/z of the precursor, whereas Crux does:

// skip all peaks within precursor ion mz +/- 15
if(peak_location < precursor_mz + 15 &&  peak_location > precursor_mz - 15){
  continue;
}

We should find out what Comet does, and then make sure that Tide does what Comet does.

Bill

[William S Noble]

According to Sean, comet controls this behavior with the remove_precursor_peak and remove_precursor_tolerance parameters, The default is do not remove.

I think we should add this option to Tide, and have its behavior mimic that of Comet.

[Kaipo]

Added in r16263, but add the case for charge reduced peaks post v2.0