Search Results for "java gui based sequencing format conversion tool"
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Showing 44 open source projects for "java gui based sequencing format conversion tool"
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Build Agents and Models on One PlatformGemini Enterprise Agent Platform is Google Cloud's comprehensive platform for developers to build, scale, govern, and optimize agents and models. Choose from Google's most advanced models and third-party models like Anthropic's Claude Model Family.
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Host LLMs in Production With On-Demand GPUsDeploy your model, get an endpoint, pay only for compute time. No GPU provisioning or infrastructure management required.
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ffmpeg-commander
A web-based GUI for quickly generating common FFmpeg command-line
ffmpeg-commander is a web-based graphical interface that simplifies the creation of FFmpeg commands for common video and audio encoding tasks. It provides a user-friendly environment where users can configure encoding options without needing to memorize complex command-line syntax. Built with modern web technologies, it generates FFmpeg commands dynamically based on user input. The tool focuses on common workflows such as format conversion, compression, and codec selection. It can optionally... -
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Videomass
Videomass is a free, open source and cross-platform GUI for FFmpeg
Videomass is a free, open-source graphical interface for FFmpeg designed to make advanced video and audio processing accessible to both beginners and experienced users. Built in Python using wxPython, it provides a cross-platform environment for managing encoding, conversion, and editing tasks through a visual interface. The software supports multitasking operations, allowing users to process multiple media files simultaneously. It offers extensive configuration options while also providing... -
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Bili23 Downloader
Cross platform GUI tool for downloading videos from Bilibili sites
Bili23-Downloader is an open source desktop application designed for downloading video content from the Bilibili platform. It provides a graphical interface that allows users to download various types of media including user-uploaded videos, series episodes, movies, and other hosted content. It focuses on ease of use with a zero-configuration setup, making it accessible to both beginners and experienced users. It supports high performance downloads through multi-threading and includes resume... -
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NGSEP
NGSEP (Next Generation Sequencing Experience Platform)
NGSEP is an integrated framework for analysis of short and long DNA high throughput sequencing reads. The current version provides functionalities for both de-novo and reference guided analysis of sequencing data, including genome assembly, read mapping, variants detection and genotyping and de-novo analysis of data generated from reduced representation protocols. NGSEP also provides modules for analysis of genomic variation databases (VCF files), including functional annotation, filtering,... -
Fully Managed MySQL, PostgreSQL, and SQL ServerCloud SQL handles your database ops end to end, so you can focus on your app.
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miRDeep*
MiRDeep*
Please cite: An, J., Lai, J., Lehman, M.L. and Nelson, C.C. (2013) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res, 41, 727-737. We will create index for you if you tell us your interested species (j.an@qut.edu.au). download command line version "MDS_command_line_Vxx.zip" clicking "Browse All Files" please find miRPlant in sourceforge for plant miRNA prediction. -
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pdf combiner merger converter splitter
PDF Combiner is a user-friendly, GUI-based tool built in
PDF Combiner is a user-friendly open source free to use, GUI-based tool for combining, pdf to excel, pdf to word, image to pdf, zip, unzip annotate and splitting PDF files. It is easy to use, supports multiple file insert and delete and process, and allows you to adjust the order of files before combining. -
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123FASTQ
An intuitive and efficient tool for preprocessing Illumina FASTQ reads
123FASTQ performs all the pre-processes of Illumina next-generation sequencing reads (FASTQ files) easier than ever. Download the quick user manual for the latest version: https://dl.adbioinformatics.net/NGSNeeds/myTools/123Fastq_v1.3_Manual.pdf Authors: Milad Eidi, Samaneh Abdolalizadeh, Mohammad Hossein Nassirpour Supervisors: Javad Zahiri, PhD University of California San Diego Masoud Garshasbi, PhD Tarbiat Modares University, Tehran, Iran If you use 123FASTQ,... -
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Piper
A distributed workflow engine
Piper is a multimedia-focused tool designed to simplify audio and video processing workflows through streamlined command execution. It acts as a wrapper around FFmpeg-like utilities, enabling users to build pipelines for media transformation with reduced complexity. The project emphasizes automation and reproducibility, allowing consistent handling of media tasks across environments. It supports chaining operations such as encoding, filtering, and conversion in a structured manner. Piper is... -
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...To support users to conveniently conduct spectral library searching and validation, we have also implemented a GUI application, called CalibrWizard. It integrates Calibr and PercolatorTsvConverter, a conversion tool for converting Calibr's results into a tab-delimited format as input to Percolator, and can use the function of Percolator for validation. Using the wizard, users can conveniently set the parameters of the three tools and execute the workflow. ...
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Cut Data Warehouse Costs by 54%BigQuery delivers 54% lower TCO with exabyte scale and flexible pricing. Free migration tools handle the SQL translation automatically.
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quick-media
media(audio/image/qrcode/markdown/html/svg/png) support
quick-media is a lightweight multimedia processing toolkit designed to simplify common video and audio operations through streamlined command execution. It provides a wrapper around FFmpeg functionality, enabling users to perform tasks such as transcoding, clipping, and format conversion with simplified commands. The tool emphasizes ease of use while still allowing access to advanced encoding parameters when needed. It supports batch processing, making it efficient for handling multiple... -
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CusVarDB
CusVarDB generated variant protein database from NGS-datasets
CusVarDB is a windows based tool for creating a variant protein database from Next-generation sequencing datasets. The program supports variant calling for Genome, RNA-Seq and ExomeSeq datasets. The program performs mainly 4 modules 1. Align the datasets with reference database 2. Perform the variant calling using Genome Analysis Toolkit (GATK) 3. Annotate the variant using ANNOVAR 4. Create the variant protein database Apart from the main modules, the program also supports... -
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DataSink
Take a JDBC ResultSet and stream it in one of the supported formats
DataSink takes a JDBC ResultSet and streams it in in a format of your choice. You can as well zip the stream and send it over the network, if you want. DataSink currently implements the following table formats: DBF (the xBase file format), XHTML, and genericode. You can use it as an Ant task or directly from Java. -
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Template Tool Release v4.3
Unifying Business Requirements with Application Design through a GUI.
The Template Tool (TT) is a Java-based software, which DOES NOT require the user to write code. TT is a fully functional application that facilitates communication, collaboration, requirements traceability, and rapid mock-up prototyping from the point of conception and requirements gathering, to development, testing, and implementation. With the use of drag-and-drop and push-button selections without having to write any code, TT allows end users to add field components, skip-logic, business... -
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Pootle, Virtaal & Translate Toolkit
Localization tools built by localizers for localizers
Tools for localization: - Pootle: web based translation management system. - Virtaal: Computer Aided Translation (CAT) tool. - Translate Toolkit: QA, format conversion and support (PO, Java .properties, OpenOffice, Mozilla, XLIFF, TMX, TBX, CSV, Qt .ts). -
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Korat2015
Enhanced Korat supports GUI, FSM, JUNG and JSON.
Korat is a tool for constraint-based generation of structurally complex test inputs for Java programs. Please see http://korat.sourceforge.net/index.html for more information on the Korat application. Korat 2015 includes the below enhancements to Korat: - Graphical User Interface using Java Swing - Graph Output Format using JUNG (Java Universal Network/Graph Framework) - Finite State Machine Domain - Graph Archival using JSON (JavaScript Object Notation) The Wiki page has... -
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RedisClient
Java Redis Client GUI Tool
This is a redis client GUI tool written based on Java SWT and Jedis. It's my objective to build the most convenient redis client GUI tool in the world. In the first place, it will facilitate in editing redis data, such as: add, update, delete, search, cut, copy, paste etc. -
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Java class libraries for structural biology development: includes protein format conversion tool, printf-based text formatting, Pred2ary secondary structure prediction, neural net library, Hooke-Jeeves global optimizer, and misc. math & statistics.
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IQuant
A pipeline for quantitative proteomics based upon isobaric tags
IQuant is an automated pipeline for quantitative proteomics based upon isobaric tags. It integrates post-processing tool of protein identification and advanced statistical algorithms to process the MS/MS signals generated from the peptides labeled by isobaric tags for quantification. IQuant can run from a graphical user interface (GUI) as well as a command-line interface and work with both Windows and Linux system. This website contains the IQuant software, an example data labeled by... -
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DbRevision project aimed to help developers implement automatic upgrade database structure from one reversion to other. DB structure described in independent, XML-based format. All upgrade actions described in XML too.
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Infofuze
Data migration/conversion library based on STX and XSLT transformation
Infofuze is a Java library and server application that can be used to transform and combine data from various sources into a specific XML or other text output format that can be stored or indexed. -
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QueLang
QueLang is a designing tool to use for Questionnaire Design.
This is the first implementation of QueLang. QueLang is a language I designed for Questionnaire Design and Implementation. This software can compile your code (written in .ql text files) into a special .qlc format (a kind of database). Then it can read those .qlc files to open them in viewer and export them to PDF format. It can be also used for exam and test designing! Tested on: -Linux Ubuntu 12.04 -Windows 7 64-bit QueLang can run by double clicking the .jar (or .exe)... -
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Swing Artist
Mini Java IDE and Swing builder
The aim of this project is to build an IDE for Java language which can be used to develop GUI based applications easily without knowing about the GUI components in detail. The idea is to enable users to make GUI as if they are using paint application to draw a design and later generating the code for it. The project also includes a built in Code Editor for editing Java applications. -
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NGS Format Convert(NGS-FC)
A tool for conversion between next generation sequencing data formats.
A tool for conversion between next generation sequencing data formats. NGS-FC supports a lot of NGS data formats and it is easily to be extended in the next version. It allows users to run their own scripts for data format conversion. NGS-FC can convert file formats from one to another and retrieve NGS data from related databases. NGS-FC can load other programs to perform analysis on data with different file formats without writing any scripts. ... -
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Large Text File converter
Java Based Heavy-duty utilitity to process large delimited text files
TextZilla is a Multithreaded Java utility which can process huge size delimited text files to extract, convert, encode, decode, encrypt/decrypt text data from source and write it in desired output file or files. It provides fully extensible framework based on which Java classes can be created, for example it currently has MD5 conversion capability, based on same design classes for 3DES ,AES or any other Algo can be created. -
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BAMStats is a GUI desktop tool for calculating and displaying metrics to assess the success of Next Generation Sequencing mapping tools. BAMstats is written in Java and based around the Picard API.
