Open Source Python Scientific/Engineering Software - Page 93

Python API to the german wordnet GermaNet. In the current state this can be only seen as a quickstart-help to access GermaNet. To be honest, this API can't be called API. To use it, you will need access to a licensed copy of GermaNet (version > 5).

This project is aimed at providing useful thermodynamic tools for biochemists, including formation energy estimation of virtually every biochemical compound and metabolic pathway analysis and profiling.

This simple Python API aims to provide a simple and easy to understand access to the discharge database of the GOLEM Tokamak. The scipy, numpy and matplotlib Python libraries are used for data analysis and plotting.

Python library to perform electronic structure calculations with tight binding models in different types of lattices and different dimensionalities. It allows to include different terms in the Hamiltonian as sublattice, exchange field or magnetic field. Provides functions to calculate different Green functions, band structure, density of states, transport using Landauer formula, topological invariants, etc.

Graphing Calculator made in Python

A Python interface to the GSL library. The wrapper covers nearly everything GSL provides.

pyhard2 is an object-oriented framework to help in the development of instrument drivers. pyhard2 is proposed as an alternative to LabVIEW. Emphasis is given on serial drivers but the framework can be used with any socket. The source also contains the implementation of a PID controller and a setpoint ramp generator. The instrument drivers may further be incorporated in a GUI, using, e.g. PyQt or PySide. Threading is automatically taken care of. Furthermore, generic GUI (called controllers) are provided and can be extended.

This project offers a python binding to the libindi library. It uses the Simplified Wrapper and Interface Generator (SWIG). You may generate a PyIndi module which mainly defines an IndiClient class. This class could be used to build python scripts able to interact with indi servers using sendNew* methods and implementing new* methods of the BaseMediator class. PyQt applications may also be built on top of IndiClient, thus allowing rapid development of GUI Indi clients. Besides Python there are also bindings for node.js, Tcl (incomplete) and PHP (not useful). As application examples you will find a Python Websocket server with which you may build a web application interacting with Indi servers, and a simple PyQt application similar to the Kstars Indi Control Panel (was built as an exercise). Finally there is an equatorial mount 3D simulator written with Freecad and Python, planned to be connected with the PyIndi module. *** The pyindi-client binding has moved to github. ***

This is an isotopic pattern calculator written in python. It depends on re, sys, numpy, operator, itertools, and matplotlib.

pylabrad development has moved to GitHub: https://github.com/labrad/pylabrad Packages are distributed through PyPI: https://pypi.python.org/pypi/pylabrad

The intention of this project is to write classes in Python that covers a number of mathematical areas.

This package lets Python users interface and communicate with MATLAB from Python. Pymatlab makes it easier for users to integrate a project with a large MATLAB codebase into python scripts by using MATLAB scripts as a part of the python program. The basic functionality of this package is to send data from Python to MATLAB's workspace to be able to run Matlab function on the data. After processing you retrieve back data to python. This enables you to process data with Mathlab's built in functions, toolboxes or Matlab-scripts. It is also possible to use MATLAB's to generate plots or other graphics. The package uses Numpy's ndarrays and translates them into MATLAB's mxarrays using Python's ctypes and Matlab's mx library. The interface to MATLAB's workspace in done through MATLAB's engine library.

pymesh will be a Python interface for Triangle (2D) and Tetgen (3D) mesh generators.

Python module to interface mzML data in Python based on cElementTree with additional tools for MS-informatics. CITATION Please cite us when using pymzML for your publications. Bald, T., Barth, J., Niehues, A., Specht, M., Hippler, M., & Fufezan, C. (2012). pymzML - Python module for high throughput bioinformatics on mass spectrometry data. Bioinformatics, 1-2. doi: 10.1093/bioinformatics/bts066

pynpvm is a Python interface to Parallel Virtual Machine (PVM), a portable heterogeneous message-passing system. It requires NumPy as a pre-requisite because the datatype numpy.array is used for message passing.

This page will introduce the general concept of point clouds and illustrate the capabilities of pyntcloud as a point cloud processing tool. Point clouds are one of the most relevant entities for representing three dimensional data these days, along with polygonal meshes (which are just a special case of point clouds with connectivity graph attached). In its simplest form, a point cloud is a set of points in a cartesian coordinate system. Accurate 3D point clouds can nowadays be (easily and cheaply) acquired from different sources. pyntcloud enables simple and interactive exploration of point cloud data, regardless of which sensor was used to generate it or what the use case is. Although it was built for being used on Jupyter Notebooks, the library is suitable for other kinds of uses. pyntcloud is composed of several modules (as independent as possible) that englobe common point cloud processing operations.

pyomnet provide an object-oriented way to define the network topology. It's a good way to illustrate network in an abstract way. pyomnet could generate the NED scenario and configuration(latter) for OMNeT++ simulation tool.

An open source project project to make Quantum Field Theory calculations and demonstrations using python.

Pypar is an efficient but easy-to-use module that allows programs written in Python to run in parallel on multiple processors and communicate using MPI. Pypar development has moved to http://code.google.com/p/pypar/

A Python package to create alarm configurations for Phoebus (https://controlssoftware.sns.ornl.gov/css_phoebus) Use pip to install the package, alternatively you can run the convert_alh.py script directly. This package has two intended usages: Converting Alarm Handler configurations to Phoebus and facilitating the creation of Phoebus alarm configs with Python scripts. Run `python convert_alh.py -h` to see about the scripts usage for converting alh to phoebus configs. See the alarmtree module's help/documentation on how to use it to build an alarm tree in Phyton and exporting it to Phoebus xml.

A Python module to easy manage monomials and polynomials.

pyprime is a program / library for finding prime numbers.

PyPspline: Python interface to PSPLINE, a one to 3D spline library

pypub is a Python library and application for downloading, storing, and analyzing biomedical literature MEDLINE records from PubMed (http://www.pubmed.com) in response to a user query.

photo organizer for picasa web album, photo geolocation from gpx data, kml builder including link to picasa web photo album