Open Source Python Scientific/Engineering Software - Page 94

Repository of python interfaces to major scientific libraries, like HDF, netCDF and MPI. The interfaces are based on SWIG or PyRex, and should be portable to most Linux/Unix platforms.

Software oscilloscope using Python and tkinter. Supports multiple sources: socket, file, audio, USB. Displays data by samples, time or frequency. Scales the input automatically or manually. It has been renamed "pdatascope" to avoid a name-clash with Pyscope, a scoping package on PyPi. See https://sourceforge.net/p/pydatascope/ for the latest code.

pysoundanalyser is a Python application that can be used to generate, visualize, and manipulate short sounds through a graphical user interface. Visualization functions include visualization of the power spectrum, the spectrogram, the autocorrelation, and the autocorrelogram of a sound. Manipulation functions include filtering, concatenating, cutting, and scaling the level of a sound. Several types of sounds can also be generated including, pure tones, harmonic complex tones, noise of different colours, frequency modulated and amplitude modulated tones.

pystats is a comprehensive Python module implementing algorithms for statistics and information theory, including probability distributions, descriptive statistics, analysis of variance, regression, and inference.

Pythia is a thermodynamically based PCR primer design program.

Implementation in Python of some of the statistical methods provided by "asurv", the survival analysis software.

IMPORTANT: The project moved over to github! You can find it at: https://github.com/exhuma/python-cluster

This is a neat little tool to visualize binary data in a graphical form. It's really interesting to look at different types of files.

python-gastables includes python modules for compressible gas flow calculations. It includes python modules for Isentropic Relations, Normal Shock Relations, Oblique Shock Relations, Fanno Flow, Isothermal Flow, Rayleigh Flow and Prandtl Meyer Functions.

This project has moved; http://astrofrog.github.com/python-montage/

ngram is a module to compute the similarity between two strings. It is different to python's "difflib.SequenceMatcher" in that it cares more about the size of both strings. ngram is an port and extension of the perl module called "String::Trigram

pytpsa is an python implementation of the truncated Taylor series algebra. It allows to approximate analytical functions or maps to any order.

Simple Python class for managing tables of data in memory using NumPy. It allows to give names to views of array. The package contains few classes built on top of the basic one to be used as post processing tools for particle optics computations.

PyVisi is the Python visualisation interface: a generic Python-based interface to many different scientific visualisation packages. PyVisi is intended for use in both standard and high-performance computing environments, and with the escript package.

Generic Python driven XML/CGI interface to heterogeneous databases for the TAPIR and WFS protocols

Software for communicating with Xede engine computer system.

qips is a software package for analyzing ChIP-seq ("Chromatin ImmunoPrecipitation on sequencing") data. It finds enriched regions of arbitrary lengths and is therefore especially suited for analyzing ChIP-seq of histone marks or polymerase.

qr tracker obtains tracks of moving qr codes from video device or sequence of images

*** New releases of quichem will only be available on GitHub. *** quichem is a utility written in pure Python allowing for fast input and parsing of chemical formulae and equations. Entering data does not require any modifier keys or keystrokes to be pressed. This SourceForge page provided pre-built Windows binaries of quichem-pyside. **To run quichem on Mac OS X or Linux**, or with the wxPython front-end, please download the source from quichem's GitHub page at: github.com/spamalot/quichem.

REDItools are python scripts developed with the aim to study RNA editing at genomic scale by next generation sequencing data. RNA editing is a post-transcriptional phenomenon involving the insertion/deletion or substitution of specific bases in precise RNA localizations. In human, RNA editing occurs by deamination of cytosine to uridine (C-to-U) or mostly by the adenosine to inosine (A-to-I) conversion through ADAR enzymes. A-to-I substitutions may have profound functional consequences and have been linked to a variety of human diseases including neurological and neurodegenerative disorders or cancer. NGS technologies offer a unique opportunity to investigate RNA editing. REDItools are simple python scripts conceived to investigate RNA editing at large-scale. REDItools are now hosted at https://github.com/BioinfoUNIBA/REDItools

A nice and simple solution to control and test the masla.de relay devices. It provides a schematic or overview to easy switch relays on or off. The USB interface of the devices makes a connection easy. Written in python and use of pygtk and pyserial it can be used flexible on several platforms. And it's just a example to control the relay-devices to help you write your own program.

Calculation of Feynman graphs using R' operation

RGnome is a gtk based frontend for GNU R, which is a widely used language for statistical computing. It features a fully working R console and an editor with syntax highlighting.

rmachine is a register machine simulator (the complexity theory version), programmed in python, complete with a module to be used in your programs and a (PyQt4) GUI.