Open Source Python Scientific/Engineering Software - Page 95

pylabrad development has moved to GitHub: https://github.com/labrad/pylabrad Packages are distributed through PyPI: https://pypi.python.org/pypi/pylabrad

The intention of this project is to write classes in Python that covers a number of mathematical areas.

pymesh will be a Python interface for Triangle (2D) and Tetgen (3D) mesh generators.

Python module to interface mzML data in Python based on cElementTree with additional tools for MS-informatics. CITATION Please cite us when using pymzML for your publications. Bald, T., Barth, J., Niehues, A., Specht, M., Hippler, M., & Fufezan, C. (2012). pymzML - Python module for high throughput bioinformatics on mass spectrometry data. Bioinformatics, 1-2. doi: 10.1093/bioinformatics/bts066

pynpvm is a Python interface to Parallel Virtual Machine (PVM), a portable heterogeneous message-passing system. It requires NumPy as a pre-requisite because the datatype numpy.array is used for message passing.

pyomnet provide an object-oriented way to define the network topology. It's a good way to illustrate network in an abstract way. pyomnet could generate the NED scenario and configuration(latter) for OMNeT++ simulation tool.

An open source project project to make Quantum Field Theory calculations and demonstrations using python.

PyPeriod is a software for register and control woman's periods. This show the days passed from the last period, the average of days of periods and the period history. This is useful for womans who need checking often hers periods for health reasons.

A Python package to create alarm configurations for Phoebus (https://controlssoftware.sns.ornl.gov/css_phoebus) Use pip to install the package, alternatively you can run the convert_alh.py script directly. This package has two intended usages: Converting Alarm Handler configurations to Phoebus and facilitating the creation of Phoebus alarm configs with Python scripts. Run `python convert_alh.py -h` to see about the scripts usage for converting alh to phoebus configs. See the alarmtree module's help/documentation on how to use it to build an alarm tree in Phyton and exporting it to Phoebus xml.

A Python module to easy manage monomials and polynomials.

pypub is a Python library and application for downloading, storing, and analyzing biomedical literature MEDLINE records from PubMed (http://www.pubmed.com) in response to a user query.

photo organizer for picasa web album, photo geolocation from gpx data, kml builder including link to picasa web photo album

PYthon RELiabilitY A python package implementing state-of-the-art numerical methods arising in the field of uncertainty quantification : from statistical inference to uncertainty propagation for various purposes.

Pythia is a thermodynamically based PCR primer design program.

pyclashie is a software developed in python to show graphic view of code dependencies in, virtually, any programming language. The idea is to analize directories of source code, and search for class hierarchy and dependencies, writing them to .dot files.

Implementation in Python of some of the statistical methods provided by "asurv", the survival analysis software.

This is a neat little tool to visualize binary data in a graphical form. It's really interesting to look at different types of files.

This project has moved; http://astrofrog.github.com/python-montage/

ngram is a module to compute the similarity between two strings. It is different to python's "difflib.SequenceMatcher" in that it cares more about the size of both strings. ngram is an port and extension of the perl module called "String::Trigram

pytpsa is an python implementation of the truncated Taylor series algebra. It allows to approximate analytical functions or maps to any order.

Simple Python class for managing tables of data in memory using NumPy. It allows to give names to views of array. The package contains few classes built on top of the basic one to be used as post processing tools for particle optics computations.

PyVisi is the Python visualisation interface: a generic Python-based interface to many different scientific visualisation packages. PyVisi is intended for use in both standard and high-performance computing environments, and with the escript package.

Generic Python driven XML/CGI interface to heterogeneous databases for the TAPIR and WFS protocols