Search Results for "format conversion"
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Showing 37 open source projects for "format conversion"
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QGIS
Cross platform (lin/win/mac) geographical information system (GIS)
...We also collect case studies of how people all over the world use QGIS for their GIS work. You can view combinations of vector and raster data (in 2D or 3D) in different formats and projections without conversion to an internal or common format. -
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L7
Large-scale WebGL-powered geospatial data visualization analysis
L7 is a WebGL-based open source large-scale geospatial data visual analysis development framework launched by Ant Financial's AntV data visualization team. The L in L7 stands for Location, and the 7 stands for the seven continents of the world, implying the ability to provide visual analysis for global location data. L7 focuses on the visual expression of data, and realizes clear and effective expression from data to information through the setting of visual variables such as color, size,... -
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NGSEP
NGSEP (Next Generation Sequencing Experience Platform)
...The current version provides functionalities for both de-novo and reference guided analysis of sequencing data, including genome assembly, read mapping, variants detection and genotyping and de-novo analysis of data generated from reduced representation protocols. NGSEP also provides modules for analysis of genomic variation databases (VCF files), including functional annotation, filtering, format conversion, comparison, clustering, imputation, introgression analysis and different kinds of statistics. Since version 4, we provide functionalities for management of genomes and transcriptomes, including genome alignment and annotation of transposable elements. A complete list of functionalities is available in our wiki (https://sourceforge.net/p/ngsep/wiki/Home/). ... -
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librsb
A shared memory parallel sparse matrix library including Sparse BLAS.
librsb is a library for sparse matrix computations featuring the Recursive Sparse Blocks (RSB) matrix format. This format allows cache efficient and multi-threaded (that is, shared memory parallel) operations on large sparse matrices. The most common operations necessary to iterative solvers are available, e.g.: matrix-vector multiplication, triangular solution, rows/columns scaling, diagonal extraction / setting, blocks extraction, norm computation, formats conversion. -
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timetools (for r-cran)
Seasonal/Sequential (Instants/Durations, Even or not) Time Series
Objects to manipulate sequential and seasonal time series. Sequential time series based on time instants and time durations are handled. Both can be regularly or unevenly spaced (overlapping durations are allowed). Only POSIX* format are used for dates and times. The following classes are provided : POSIXcti, POSIXctp, TimeIntervalDataFrame, TimeInstantDataFrame, SubtimeDataFrame ; methods to switch from a class to another and to modify the time support of series (hourly time... -
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Jmol
An interactive viewer for three-dimensional chemical structures.
Over 1,000,000 page views per month. Jmol/JSmol is a molecular viewer for 3D chemical structures that runs in four independent modes: an HTML5-only web application utilizing jQuery, a Java applet, a stand-alone Java program (Jmol.jar), and a "headless" server-side component (JmolData.jar). Jmol can read many file types, including PDB, CIF, SDF, MOL, PyMOL PSE files, and Spartan files, as well as output from Gaussian, GAMESS, MOPAC, VASP, CRYSTAL, CASTEP, QuantumEspresso, VMD, and many other... -
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CoreBus
Cross-platform (Win, Linux) Modbus (TCP / RTU / ASCII) GUI terminal
CoreBus is a cross-platform terminal for working with serial ports and TCP sockets with support for Modbus TCP/RTU/ASCII protocols. Features: No Protocol * Working with data in string or byte format * Support for different encodings * There are three sending modes: single, cyclic, and file sending Modbus * Support for various Modbus protocol variations: TCP, RTU, ASCII and RTU/ASCII over TCP * Convenient operation with recording functions * The ability to work with float numbers * The ability to work with binary data * A Modbus scanner that searches for devices on a communication line Modbus monitoring * Convenient display of registers * Conversion to numeric types * Transformations by formula * Real-time charting * Logger Macros * Separate macros for each operating mode * A macro consists of an unlimited number of commands (actions) * Common Slave ID for Modbus macros * Import/Export Source code: https://github.com/AndreyAbdulkayumov/CoreBus -
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crossmap
convert genome coordinates betweeen assemblies
CrossMap is a program for convenient conversion of genome coordinates and genomeannotation files between assemblies (eg. lift from GRCh36/hg18 to GRCh37/hg19 or vice versa).It support file in BAM, SAM, BED, Wiggle, BigWig, GFF, GTF format. -
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autoplot
Simple Gnuplot automation and plot conversion tool.
Autoplot is a simple Perl script to plot Gnuplot files with simple dependency checking and conversion of the plots to different formats using rsvg-convert. The Gnuplot scripts must plot to a SVG terminal and output the result to STDOUT for the script to work as intended. The script reads all .gnuplot files in the working directory and creates SVG plots from them in svg subdirectory. SVG plots can be converted to PDF and PNG format, while the resulting files are placed in pdf and png directories, respectively. -
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BrukerEyes
BrukerEyes is an open-source package for Bruker datasets management
BrukerEyes is a cross-platform open-source package for Bruker datasets management. It helps scientists to explore their datasets easily. This project was supported by: European Union's Horizon 2020 research and innovation program under the Marie Sklodowska-Curie grant agreement No 813120 (INSPiRE-MED) © Institute of Scientific Instruments of the Czech Academy of Sciences. -
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Re-face
Re-face is a helper applet tied to Lifted and Hexi projects.
In the manual improvement of hexahedral elements, faces belonging to incomplete elements are subject to loss during two format conversion steps. Re-face retrieves the lost faces, restoring the composition and integrity of the parent mesh. -
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ms
Tiny millisecond conversion utility
Use this package to easily convert various time formats to milliseconds. Works both in Node.js and in the browser. If a number is supplied to ms, a string with a unit is returned. If a string that contains the number is supplied, it returns it as a number (e.g.: it returns 100 for '100'). If you pass a string with a number and a valid unit, the number of equivalent milliseconds is returned. For added safety, we're using Template Literal Types (added in TypeScript 4.1). This ensures that you... -
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silico
Libraries and scripts for molecular modelling written in Perl
A perl molecular toolkit designed to assist in general molecular modelling activities. Silico provides file format conversion, molecular manipulation and analysis and a simple way to write wrapper scripts around other preexisting software packages. -
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The ChIP-Seq software provides methods for the analysis of ChIP-seq data and other types of mass genome annotation data. The most common analysis tasks include positional correlation analysis, peak detection, and genome partitioning into signal-rich and signal-depleted regions.
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Excel Google Earth KML Creator
Convert site coordinates, sectors and MW links in Excel to KML format
This handy Excel VBA macro was designed for the telecom market, where you are able to convert points to KML, as well as sectors (as used in mobile network base stations) and links (as used for microwave links). Technical info presented in the resulting KML output file is not to be used for engineering / planning purposes. This was not the intention of this VBA tool. The only intention was to create a conversion tool with additional information presented in the KML file for display only... -
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fcGENE: Genotype format converter
Format converting tool for genotype Data (e.g.PLINK-MACH,MACH-PLINK)
Main application is twofold: first to convert genotype SNP data into formats of different imputation tools like PLINK MACH, IMPUTE, BEAGLE and BIMBBAM, second to transform imputed data into different file formats like PLINK, HAPLOVIEW, EIGENSOFT and SNPTEST. Readable file formats: plink-pedigree (ped and map), plink-raw, plink-dosage, mach , minimac, impute, snptest, beagle and bimbam. Similarly all kinds of imputation of outputs are also accepted. Formats which can be generated by... -
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RGAAT
Reference based genome assembly and annotation for new genome
This program can assemble and/or annotate genome for new genome and known genome upgrade using sequence alignment file (SAM or BAM format), sequence variant file (VCF format or five coloum table (tab-delimited, including chromosome, position, id, reference allele and alternative allele)) or new genome sequence file (FASTA format) based on reference genome sequence file (FASTA format) and annotation file (TBL, GTF, GFF, GFF3 or BED format). -
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ConvertMAS
ConvertMAS converts Chemical File Formats mol, mol2 and sdf.
...It works on mol, mol2 and sdf files. It converts single file to respective formats. It will split sdf file with multiple molecules into seperate single files of any desired format. Also ConvertMAS creates sdf files from joining of mol, mol2 and sdf files. This is stand alone application; hence no need of internet connectivity to get results. It will generate output files in less time. Various online tools are available for conversion of Chemical file formats; but ConvertMAS mainly works on mol, mol2 and sdf effectively. -
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Java class libraries for structural biology development: includes protein format conversion tool, printf-based text formatting, Pred2ary secondary structure prediction, neural net library, Hooke-Jeeves global optimizer, and misc. math & statistics.
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DAWGPAWS is a suite of command line programs written in Perl that accelerates annotation of genes and transposable elements in plant genomes by automating the process of running annotation programs and facilitating combined evidence annotation curation.
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nwbas2ecce
nwbas2ecce converts nwchem basis set files to the ECCE format
The basis sets included with ECCE have -- as far as I can tell -- not been updated for many years. In addition, many of the newer basis sets that come with nwchem aren't included, such as the def2- series. nwbas2ecce is a python script that aims to automate as much as possible of the conversion process of a nwchem basis set file into the files necessary for ECCE to included it in the basis set tool. The process isn't completely automatic, but I also believe that it shouldn't be to... -
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This project provides a set of libraries written in Java to easily manipulate Multi-Criteria Decision Aid (MCDA) concepts, especially related to outranking methods, and XMCDA files.
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Shell-scripts for the conversion & visualization of time series in raw MBDyn-ASCII-output format resulting from MBDyn multi-body-system simulations . Forms a minimalistic interface to make post-processing of MBDyn-bulk-data easier and more comfortable.
