silico

A perl molecular toolkit designed to assist in general molecular modelling activities. Silico provides file format conversion, molecular manipulation and analysis and a simple way to write wrapper scripts around other preexisting software packages.

Features

Read and write multiple modelling formats: pdb, mol2, sdf, mae, maegz, etc.
Build bilayers, vesicles and micelles
Dendrimer construction
Wrapper routines for Schrodinger Macromodel and Sybyl
Manipulate Gromacs .itp files

Project Samples

Cylinder of molecules built with random_box

Project Activity

See All Activity >

License

GNU General Public License version 2.0 (GPLv2)

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Additional Project Details

Operating Systems

BSD, Linux

Intended Audience

Science/Research

User Interface

Command-line

Programming Language

Perl

Related Categories

Perl Chemistry Software

Registered

2008-03-27

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