A quality control analysis tool for high throughput sequencing data
MiRDeep*
convert genome coordinates betweeen assemblies
An intuitive and efficient tool for preprocessing Illumina FASTQ reads
A de novo local assembler for paired reads
miRPlant: An Integrated Tool for Identification of Plant miRNA
ChIP-seq coverage island analysis algorithm for broad histone marks
Reference based genome assembly and annotation for new genome
Compression for SAM/BAM file format
Supervised Ranking of Contigs in de novo Assemblies
PRADA : Pipeline for RNA-Sequencing Data Analysis
Fast, Accurate and Sensitive GPU-based Short Read Aligner
High-Quality methylation maps and SNV calling from BS-Seq experiments
A set of tools for working with high-throughput sequencing data
Program to fix issues with helicos bam files.
Enhanced splice junction detection and estimation from RNA-Seq data
An Hierachical Approach to Multi-Reference Genome compression
KBC is a UI for the BOINC Client of the Berkeley University
DeNovoCheck: Inheritance analysis for NGS trio data
cnvHiTSeq is a set of tools for detecting CNVs using sequencing data.
A lightweight OpenGL SAM/BAM viewer