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  • 1
    Auto Primer3

    Auto Primer3

    Automatically design primers to genes/coordinates using primer3.

    PLEASE NOTE: THIS PROJECT PAGE WILL NO LONGER BE UPDATED - PLEASE USE THE GITHUB PAGE (https://github.com/gantzgraf/autoprimer3) TO FIND THE LATEST RELEASE (https://github.com/gantzgraf/autoprimer3/releases/latest). AutoPrimer3 retrieves gene information, DNA sequences and SNP information from the UCSC genome browser and uses primer3 to automatically design primers to genes or genomic coordinate targets. Primers may be designed using information from any of the UCSC hosted genomes and primers can be made to avoid overlapping SNPs for genomes where SNP databases are available.
    Downloads: 0 This Week
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  • 2
    CFD General Notation System (CGNS)
    The CFD General Notation System (CGNS) provides a standard for recording and recovering computer data associated with the numerical solution of fluid dynamics equations. WE HAVE MOVED! Very old (unsupported) stable releases can still be found here, but the new repository is at https://github.com/CGNS
    Downloads: 1 This Week
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  • 3

    CUDAlign

    CUDAlign is a tool that aligns huge DNA sequences in CUDA capable GPUs

    ...CUDAlign: using GPU to accelerate the comparison of megabase genomic sequences. PPOPP 2010: 137-146 The latest source code can be found in Github. See the MASA project at https://github.com/edanssandes/MASA-CUDAlign
    Downloads: 0 This Week
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  • 4
    YAGY

    YAGY

    Computer calculations made easy

    Yagy is a (yet another) Graphical user interface for Yacas, a (yet another) Computer Algebra System. NOTE: Yacas and yagy development has moved to github. The new repositories are located at https://github.com/grzegorzmazur/yacas and https://github.com/grzegorzmazur/yagy . The mailing list has been moved over to https://groups.google.com/forum/#!forum/yacas . The downloads section at sourceforge will be kept up to date for the foreseable future.
    Downloads: 0 This Week
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  • 5
    vHDL Obfuscator GUI

    vHDL Obfuscator GUI

    vHDL Obfuscator is an small GUI to obfuscate and reformat HDL files

    ...Sometimes is necessary to share the source HDL file but maintaining a little level of control and protection of the intellectual property. This tool generate obfuscated code that is almost unreadable to humans, but is still readable to compilers and simulators. This tool use GHDL (https://sourceforge.net/projects/ghdl-updates/), HDLObf (https://sourceforge.net/projects/hdlobf/), Icarus Verilog (https://sourceforge.net/projects/iverilog/) and was created in Lazarus (http://www.lazarus-ide.org/)
    Downloads: 0 This Week
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  • 6
    This project has now moved to bitbucket!!! https://bitbucket.org/Teknomancer/nopf Sourceforge won't let me delete it from here! WARNING TO ALL!! Don't ever create a project on sourceforge! they will not let you delete it!!! Go to other hosting providers that are much nicer!!!
    Downloads: 0 This Week
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  • 7

    GraspIt

    A simulator for robotic hands.

    A simulator for robotic hands. This repository still contains the (somewhat outdated) releases and user manual. For the latest source code (recommended) please go to https://github.com/graspit-simulator
    Downloads: 0 This Week
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  • 8

    Billiard 3D Project

    Billiard table simulator

    It could help you to carry out numerous experiments on the billiard table. ATTENTION! X Window System, GLUT, OpenAL are required (https://stackoverflow.com/questions/3907064/installing-opengl-and-openal-in-ubuntu)
    Downloads: 0 This Week
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  • 9
    kvwmap is a complex WebGIS-Client and -Server solution for eGovernment-purposes written in PHP using UMN-Mapserver-technologies, MySQL- and PostgreSQL/PostGIS-databases, SVG, etc. ATTENTION!!! This Project is no longer updated on SourceForge. Please use https://github.com/srahn/kvwmap instead.
    Downloads: 0 This Week
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  • 10
    GenomeView
    GenomeView is a genome browser and annotation editor that displays reference sequence, annotation, multiple alignments, short read alignments and graphs. Most major data formats are supported. Local and internet files can be loaded. This project has moved to GitHub: https://github.com/GenomeView/genomeview
    Downloads: 6 This Week
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  • 11

    Conway's Game of Life

    Conway's Game of life cross-platform implementation.

    ...Game of life is a popular mathematics game that was invented by John H. Conway in 1970. It's have very simple rules which lead to the creation of beautiful and amazing patterns. Android version https://play.google.com/store/apps/details?id=com.abtimal.conwaysgameoflife
    Downloads: 7 This Week
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  • 12
    Exreco

    Exreco

    EXperimental REplicator COllider

    The project is moved to GitHub : https://github.com/bekisz/exreco/ Exreco is a agent based platform for the simulation and study of the Darwinian evolutionary process. It aims to support the exploration of genetically rooted phenomena like - aging (programmed cell death) - sexual and asexual reproduction - altruism of individuals - spread of diseases The typical way of using Exreco starts by defining the behavior of your replicators ( agents that can reproduce and evolve over time), and defining the environment of these replicators. ...
    Downloads: 0 This Week
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  • 13

    GASiC

    Genome Abundance Similarity Correction

    ...You can find the accompanying paper here: http://nar.oxfordjournals.org/content/41/1/e10.short Thanks to the great work of the SeqAn team, you can now use GASiC as a Knime workflow: https://github.com/seqan/knime_seqan_workflows/tree/master/metagenomics_gasic_workflow
    Downloads: 1 This Week
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  • 14

    ctsa

    A Univariate Time Series Analysis package in ANSI C

    CTSA is a C software package for univariate time series analysis. This is a work in progress. ARIMA and Seasonal ARIMA models have been added so far. Other functionality will be added soon . Documentation - https://github.com/rafat/ctsa/wiki
    Downloads: 0 This Week
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  • 15
    *WARNING* gtburst moved to github (https://github.com/giacomov/gtburst). ########################################## gtBurst is a tool to download data, analyze and simulate Gamma-ray Bursts and Solar Flares as observed by the NASA Fermi satellite.
    Downloads: 0 This Week
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  • 16

    Chemical Kinectics Solver

    Basic Chemical Kinetics Solver

    The project lives on GitHub - please see: https://github.com/DetlevCM/chemical-kinetics-solver
    Downloads: 0 This Week
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  • 17

    libsharp

    Library for spherical harmonic transforms (SHT)

    NOTE: as of April 24, 2015, libsharp development has moved to Github (https://github.com/dagss/libsharp). Libsharp is a collection of algorithms for efficient conversion between maps on the sphere and their spherical harmonic coefficients. It supports a wide range of pixelisations (including HEALPix, GLESP, and ECP). This library is a successor of libpsht (http://sourceforge.net/projects/libpsht). A scientific overview over the functionality is given in the paper available at http://arxiv.org/abs/1303.4945.
    Downloads: 0 This Week
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  • 18
    DSPatcher

    DSPatcher

    Cross-Platform Graphical Tool for DSPatch

    ...The DSPatcher project is made up of 2 parts: * QtPatcher - A cross-platform circuit drawing library written in Qt C++. * DSPatcher - A graphical tool based on QtPatcher for building DSPatch circuits. *See also:* DSPatch ( https://github.com/MarcusTomlinson/DSPatch ): A powerful C++ dataflow framework. DSPatchables ( https://github.com/MarcusTomlinson/DSPatchables ): A DSPatch component repository.
    Downloads: 0 This Week
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  • 19
    Shoal

    Shoal

    A lot of fish in a shoal, in a gigantic scientific ocean.

    ...Shoal Shell Project needs grownup I'm just a student in the university, and the shoal shell just in its begining, if you have any idea about shoal, please contact me from xie.guigang@gmail.com. The Shoal shell needs your professional advice. Try get some help (if you want build the shoal library by yourself): https://sourceforge.net/p/shoal/wiki/Shoal%20Developer%20Guide/
    Downloads: 0 This Week
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  • 20
    A Linux tool for the MikroElektronika (www.mikroe.com) AVRprog2 programming hardware. We have migrated to Github! https://github.com/avrprog2/avrprog2-code
    Downloads: 0 This Week
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  • 21

    ezSIFT

    An easy-to-use standalone SIFT library written in C/C++

    ...The ezSIFT is self-contained, and does not require any other libraries. So it is easy to use and modify. Besides, the implementation of the ezSIFT is straightforward and easy to read. Wiki page: https://sourceforge.net/p/ezsift/wiki/
    Downloads: 0 This Week
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  • 22

    TransGeneScan

    TransGeneScan is a gene finding tool for metatranscriptomic sequences

    NOTE: TransGeneScan is migrated to Github (https://github.com/COL-IU/TransGeneScan). TransGeneScan is no longer maintained in SourceForge. Please find the latest version in Github. TransGeneScan is a gene finding tool for Metatranscriptomic sequences. TransGeneScan incorporates strand-speci c hidden states, representing coding sequences in sense and anti-sense strands on transcripts in a Hidden Markov Model similar to the one used in FragGeneScan (http://fraggenescan.sourceforge.net/), and can predict a sense transcript containing one or multiple genes (in an operon) or an antisense transcript.
    Downloads: 0 This Week
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  • 23
    Gemina (Genomic Metadata for Infections Agents) is a web interface and database for storing genomic sequence of pathogens and epidemiological information for the infectious diseases they cause. The Gemina database is available under Creative Commons (CCO) public domain license. https://creativecommons.org/publicdomain/zero/1.0/
    Downloads: 0 This Week
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  • 24

    uaiMockServer

    uaiMockServer will create a Rest Server for you with only one command

    Create a mock server to your tests with just one command line. The documentation can be found in: http://uaimockserver.com The source code in here: https://github.com/uaihebert/uaiMockServer
    Downloads: 0 This Week
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  • 25
    SOAPdenovo-Trans

    SOAPdenovo-Trans

    A de novo transcriptome assembler.

    Latest Codes on GitHub: https://github.com/aquaskyline/SOAPdenovo-Trans SOAPdenovo-Trans is a de novo transcriptome assembler inherited from the SOAPdenovo2 framework, designed for assembling transcriptome with alternative splicing and different expression level. The assembler provides a more comprehensive way to construct the full-length transcript sets compare to SOAPdenovo2.
    Downloads: 8 This Week
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