NOTE: TransGeneScan is migrated to Github (https://github.com/COL-IU/TransGeneScan).
TransGeneScan is no longer maintained in SourceForge. Please find the latest version in Github.
TransGeneScan is a gene finding tool for Metatranscriptomic sequences. TransGeneScan incorporates strand-specic hidden states, representing coding sequences in sense and anti-sense strands on transcripts in a Hidden Markov Model similar to the one used in FragGeneScan (http://fraggenescan.sourceforge.net/), and can predict a sense transcript containing one or multiple genes (in an operon) or an antisense transcript.
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