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TransGeneScan is a gene finding tool for metatranscriptomic sequences

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NOTE: TransGeneScan is migrated to Github (

TransGeneScan is no longer maintained in SourceForge. Please find the latest version in Github.

TransGeneScan is a gene finding tool for Metatranscriptomic sequences. TransGeneScan incorporates strand-speci c hidden states, representing coding sequences in sense and anti-sense strands on transcripts in a Hidden Markov Model similar to the one used in FragGeneScan (, and can predict a sense transcript containing one or multiple genes (in an operon) or an antisense transcript.

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Additional Project Details

Intended Audience

Information Technology, Healthcare Industry

User Interface


Programming Language

Perl, C



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