Auto Primer3

PLEASE NOTE: THIS PROJECT PAGE WILL NO LONGER BE UPDATED - PLEASE USE THE GITHUB PAGE (https://github.com/gantzgraf/autoprimer3) TO FIND THE LATEST RELEASE (https://github.com/gantzgraf/autoprimer3/releases/latest).

AutoPrimer3 retrieves gene information, DNA sequences and SNP information from the UCSC genome browser and uses primer3 to automatically design primers to genes or genomic coordinate targets.

Primers may be designed using information from any of the UCSC hosted genomes and primers can be made to avoid overlapping SNPs for genomes where SNP databases are available.

Features

Automatic design of primers to genes, transcripts or genomic coordinates
Upload BED or VCF files and design primers to specified coordiantes
Export primer output to .txt, .csv or .xlsx files
Automatically avoid designing primers on top of known SNPs
Automatically check in-silico PCR results for designed pairs

Project Samples

Project Activity

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License

GNU General Public License version 3.0 (GPLv3)

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Auto Primer3 Web Site

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Additional Project Details

Operating Systems

Linux, Mac, Windows

Intended Audience

Science/Research

User Interface

JavaFX

Programming Language

Java

Related Categories

Java Scientific Engineering

Registered

2012-04-02

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