SOAPdenovo-Trans

Latest Codes on GitHub:
https://github.com/aquaskyline/SOAPdenovo-Trans

SOAPdenovo-Trans is a de novo transcriptome assembler inherited from the SOAPdenovo2 framework, designed for assembling transcriptome with alternative splicing and different expression level. The assembler provides a more comprehensive way to construct the full-length transcript sets compare to SOAPdenovo2.

Project Activity

See All Activity >

License

GNU General Public License version 3.0 (GPLv3)

Follow SOAPdenovo-Trans

SOAPdenovo-Trans Web Site

Other Useful Business Software

99.99% Uptime for MySQL and PostgreSQL Databases

Sub-second maintenance. 2x read/write performance. Built-in vector search for AI apps.

Cloud SQL Enterprise Plus delivers near-zero downtime with 35 days of point-in-time recovery. Supports MySQL, PostgreSQL, and SQL Server.

Start Free

Rate This Project

User Ratings

1.0 out of 5 stars

★★★★★

★★★★

★★★

★★

★

ease 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 1 / 5

features 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 1 / 5

design 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 1 / 5

support 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 1 / 5

User Reviews

Filter Reviews:

All

wkretzsch Posted 2018-01-12

I tried to run this program on a pair of fastqs, but I got a core dump and no error message :/

Additional Project Details

Operating Systems

BSD, Linux

Languages

Chinese (Simplified), Chinese (Traditional), English

Intended Audience

Advanced End Users, Developers

User Interface

Console/Terminal

Programming Language

C, C++

Related Categories

C++ Bio-Informatics Software, C Bio-Informatics Software

Registered

2013-05-14

Similar Business Software

OmicsBox

OmicsBox is a leading bioinformatics solution that offers end-to-end data analysis of genomes, transcriptomes, metagenomes, and genetic variation studies. The application is used by top private and public research institutions worldwide and allows researchers to easily process large and complex...

See Software
QIAGEN CLC Genomics Workbench

QIAGEN CLC Genomics Workbench is a powerful solution that works for everyone, no matter the workflow. Cutting-edge technology and unique features and algorithms widely used by scientific leaders in industry and academia make it easy to overcome challenges associated with data analysis....

See Software
BioTuring Browser

Explore hundreds of curated single-cell transcriptome datasets, along with your own data, through interactive visualizations and analytics. The software also supports multimodal omics, CITE-seq, TCR-seq, and spatial transcriptomic. Interactively explore the world's largest single-cell expression...

See Software
Geneious

Geneious Prime makes bioinformatics accessible by transforming raw data into visualizations that make sequence analysis intuitive and user-friendly. Simple sequence assembly and easy editing of contigs. Automatic annotation for gene prediction, motifs, translation, and variant calling. Genotype...

See Software
Cufflinks

Cufflinks assemble transcripts, estimate their abundances and test for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these...

See Software
OmnibusX

In the world of biological data science, navigating vast and complex datasets can be a daunting task. Our software toolkit is designed to empower you by accelerating analysis, promoting accessibility, and providing comprehensive visualization tools to help you make sense of these intricate...

See Software