Open Source Java Scientific/Engineering Software - Page 64

BioPlatforms Australia (BPA) has funded a number of datasets generation initiatives around important research themes and scientific challenges faced by Australian researchers to provide a unique public resource for the benefit of Australian life sciences research. These large scale genomic, proteomic and metabolomic datasets are being generated and centrally managed by Bioplatforms Australia in collaboration with leading scientists, research institutes and government agencies. With the support of ANDS, QFAB has developed this web application to enable the publication of these datasets to Research Data Australia (RDA). By login in, BPA can upload ISA-Tab descriptions of their studies and can edit, manage and publish their collection descriptions to Research Data Australia.

LogiDist offer a solution of "Computer Aided Logistic" with mostly informative purposes on executed pickups/delivery of merchandise. Is able to manage the whole process of purchase, order management, merchandise delivery to reduce distribution costs.

Lompad is a metatagging tool for learning object. It supports the IEEE-lom spec and SCORM, CANCORE and Normetic profiles. The interface is available in French, English and Spanish Consult the project's Web Site for more information.

Luscinia is a program for archiving and analyzing field sound recordings (especially of animals). It incorporates an interface to a database, spectrogram measurement algorithms, sound comparison algorithms, and statistical analysis.

M+ Compiler/Interpreter is a interpreter library written in Java that delivers the possibility to extend any Java application with simple scripts. Besides the usage of native datatypes and operations you can instantiate and call native Java objects.

MAGMA: Multiobjective Analyzer for Genetic Marker Acquisition A genetic algorithm for generating SNP tiling paths from a large SNP database based on the competing objectives of cost (number of SNPs) and coverage (haplotype blocks): Hubley R., Zitzler

MASQOT-GUI is an open-source, platform-independent application for two-channel microarray spot quality control. Included is a set of tools for gridding, segmentation, quantification, multivariate spot quality assessment and data visualization.

MCloudSim(formerly called NovaCloudSim) is a simulator written in Java for geographically distributed clouds. The software is modified from CloudSim 3.0, which is an open source data center simulator. All functions of CloudSim are reserved, and our newly added files are in the package org.cloudbus.cloudsim.nova. MCloudSim has following characteristics: (1) The overlay protocol can be freely replaced, and we have already ported Pastry, Kadmelia, Chord from PeerSim; (2) A Petri-Net workflow theory based task model is implemented to simulate distributed tasks; (3) A distributed cloud can be easily built by assembling and expanding the basic resource entities provided by the simulator. (4) ... If you have any questions, please contact nova@dsp.ac.cn.

Submission tool for Microarray experiments

MNDACS (Mesh Networked Data Acquisition and Control System) is a Java, network based control system. The project approach is to build a mesh system to tolerate control unit breakdowns with load balancing between units.

The MP4Free project provides a simulation, analysis and exploration platform for multi-processor system-on-chip applications at variable level of abstraction, providing also a comprehensive component library.

MGPCalculator calculate the gas consumption of a car in MPG and in Liter by 100km. You can either enter distance in miles or in kilometers.

MSA2SNP is a tool for mining SNP sites in multiple sequence alignment (MSA). This tool inherits the easy-to-use interface from MEGA4 Explorer with advance data presentation. MSA2SNP lets you visualize alignments and import from CLUSTAL program directly.

An easy-to-use simulator for decentralized distributed scheduling in Clusters, Grids, and Cloud ecosystem MaGate 2.0 is now available from github! https://github.com/huangye177/magate

Manuelito is a Java tool for decrypting posttranslational modification (PTM) patterns of proteins based on MALDI mass spectrometry spectra. It was built for analysing the 'histone code' but it can be applied to any other highly modified protein.

MapProxy is an open source technology used to create and serve up map caches. It is a middle-man between existing web map servers (like MapServer or GeoServer) and web map clients such as OpenLayers and GoogleEarth.

Maple Tree is a Java based visualization tool used by researchers in the biological sciences to visualize and graphically browse the results of analyses of gene expression data collected from microarray experiments.

Aplicación para facilitar la toma de datos del nivel de oscuridad del cielo nocturno usando un SQM-LU y aplicando las directivas establecidas por la SEA en el proyecto NIXNOX. La aplicación se conecta via TCP/IP a una raspberry pi que controla tanto un brazo robot como el SQM-LU. Las instrucciones para configurar la raspberry pi estarán disponible en breve en: http://www.luz-cero.es/maroc

Matchup program can be used to find universal primers and group-specific probes for DNA-based detection methods llike AFLP(Amplification fragment length polymorphism) or Microarray experiment.

<p>Matex is the first opensource modul that can calculate symblic terms</p>

mathCollection is a java package representing a consistent and efficient extension to the Java Collection Framework of JDK 1.4. It offers different kinds of sets with mathematical, non-destructive functions.

This tool, described in the July 2006 issue of IEEE Computer, determines how many servers to install such that average request response time is 'x' number of seconds. The tool is a Java application that is used for server sizing efforts.

Create custom substitution matrices for BLAST protein search. Easy to use GUI based application.

Mavscript ermöglicht es in einem Textdokument Berechnungen durchzuführen. Die eigentliche Berechnung verarbeitet das Algebraprogramm Yacas (oder der Java-Interpreter BeanShell).

Maximally flat (maxflat) digital filter design in Java, with arbitrary numbers of poles and zeros. "Maximally flat" means that the magnitude frequency response has the maximum number of vanishing derivatives at 0 and pi.