Open Source Java Scientific/Engineering Software - Page 66

GAME stays for Generic Architecture based on Multiple Experts. Its main purpose is to make easy prototyping, test and release of prediction systems. Released by IASC group, university of Cagliari

This is part of the GAMES Project, which consists of a set of innovative methodologies and Open Source ICT tools for designing and managing energy efficiency in IT Service Centres. The ESMI is the monitoring and sensing infrastructure which allows the fine-grained measurement and provides both an event-based and a real-time stream of data conveying information about the energy consumption in the key points of the overall system. It is completed by a set of Nagios plugin and an assessment tool which implements some green Performance Indicators and integrates data mining with the self adaptive controllers of the entire framework.

The intentions of this project are as follows: 1; Determine the potential interest level in developing a basic interface for creating models in GAMS (General Algebraic Modeling System). 2; To create a sounding board for what should be added to the exist

GAP (Grid Agents Platform) Toolkit for Modeling and Simulation of Mobile Agents in Grid Environments. GAP is an abstraction over GridSim, a Grid Simulation Toolkit for Resource Modelling and Application Scheduling for Parallel and Distributed Computing.

GAPI (pronunced gappy) is the Genetic Algorithms Programming Interface - a set of Java classes that allow users to easily integrate Genetic Algorithms into their Java programs. See "GAPI specs" in the Feature Requests forum for more info.

GATA is a graphic alignment tool for comparative sequence analysis. It makes use of BLAST to graphically align two DNA sequences, creating box- line- box representations of window scored local alignments. GATA also displays extensive GFF gene annotation.

Software for the autonomous robot GATTACA (alias CrossTiger). C-Code for low level control on Atmega328p. JAVA-Code for remote control panels and online/offline data visualization.

GAZES - Genetic Algorithm Zombie Eradication Simulation Grid-based simulator for zombie scenario. The units will use genetic algorithm to determine their actions on a cycle by cycle basis. This is a school project, so is likely on hiatus for summer.

Starting off as a simple LISP command in AutoCAD this HAVC pipe size calculator was migrated to a standalone Java application. Calculates HVAC minimum pipe ID based on GPM and FPS for numerous fluid types (found in the fluid density chart on EngineeringToolbox.com) Includes a table to automatically calculate riser piping sizes per floor. Read the README.txt file included in PipeSize.zip for instructions.

GCalc is mathematical graphing calculator system in Java

Web-based editor for the Gateway Description Language (GDL).

The Genomic Diversity and Phenotype Connection (GDPC) written in JAVA uses web services to make XML formatted data publicly available. The GDPC Browser (front-end GUI) can access these services, and other applications can use the API.

The Genomic Diversity and Phenotype Data Model (GDPDM) captures molecular and phenotypic diversity data. MySQL databases are used to implement the schema. This project develops software tools (written in Java, Perl, etc.) associated with this model.

GEAX is a Java application used to visualize and analyze cross-species gene expression microarray data.The program allows comparisons based on fold-change, p-value, quantile matching, or a combination of criteria.

GEDI (Groundtruthing Environment for Document Images) is a highly configurable document image annotation tool. Its basic structure involves two types of files, an Image file, and a corresponding .XML file in GEDI format. LAMP Univ of MD, College Park, MD

GELLO is an ANSI-accredited HL7 standard for creating computable, unambiguous clinical queries. This project creates an open source compiler and client-server IDE. Projects are stored in a subversion repository, and created by the RCP based client.

Grid-Enabled Molecular Simulation Repository (GEMS)

This project is in the scope of Geographical Information Systems. It intends to create a basic stand alone application that allows some accessibility measurement.

Genome Expression Pathway Analysis Tool - Analysis and Visualization of Microarray Gene Expression Data under Genomic, Proteomic and Metabolic Context

GEPETTO (GEne PrioriTization ExTended TOol) is an original open-source framework, distributed under the LGPL license, for gene selection and prioritization on a desktop computer that ensures confidentiality of personal data. It takes advantage of the data integration capabilities in the SM2PH-Central Framework(KD4v,MSV3d,BIRD,..), combined with in-house developed gene prioritization methods. It currently incorporates six prioritization modules, based on gene sequence, protein-protein interactions, gene expression, disease-causing probabilities, genomic context). GEPETTO is written in Java/Python and supported by an advanced modular architecture, which means that it can easily be modified and extended by the user, in order to include alternative scoring methods and new data sources. We intend to extend the system from gene-level to variant-level prioritization, by exploiting the variant data in the MSV3D database. Contact: bmhoan@gmail.com or walter.vincent.fr@gmail.com

GESPA (GEnomic Single nucleotide Polymorphism Analyzer) is a bioinformatics tool for classifying Nonsynonymous Single Nucleotide Polymorphisms (nsSNPs). GESPA predicts if a nsSNP is pathogenic using reports from literature and various algorithms to assess conservation in orthologous and paralogous protein alignments. Using reports from literature, GESPA is also able to predict the phenotype of a nsSNP with high accuracy. The software can be used clinically to determine if observed nsSNPs are associated with disease. A host of annotations are provided: orthologous and paralogous multiple sequence alignments, UCSC annotations, reports detailing conservation of a nsSNP in alignments, and links to external nsSNP and gene information such as relevant publications. GESPA is connected to a constantly updating SQL server allowing for fast data retrieval. NOTE: REQUIRES Java 1.7.0+. Port 1433 cannot be blocked by firewall, network, or antivirus program. Please cite: http://tinyurl.com/oj7p84a

GFinisher is an application tools for refinement and finalization of prokaryotic genomes assemblies using the bias of GC Skew to identify assembly errors and organizes the contigs/scaffolds with genomes references. contact dievalg at gmail.com

The GIS Metadata Manager is a simple Java-based desktop application to manage files from geographic information systems (GIS) in a specified directory by grouping files into records, adding metadata and searching the metadata to find files.

a GIS application: structure type portal in german: Strukturtypenportal

A collection of GIS realated tools.