Open Source Java Scientific/Engineering Software - Page 65

Create custom substitution matrices for BLAST protein search. Easy to use GUI based application.

Mavscript ermöglicht es in einem Textdokument Berechnungen durchzuführen. Die eigentliche Berechnung verarbeitet das Algebraprogramm Yacas (oder der Java-Interpreter BeanShell).

Maximally flat (maxflat) digital filter design in Java, with arbitrary numbers of poles and zeros. "Maximally flat" means that the magnitude frequency response has the maximum number of vanishing derivatives at 0 and pi.

Advanced calculator for devices that has J2ME supported. You can evaluate sophisticated arithmetic expressions in conventional form including function using. The set of operarations and functions can be easily extended. Works for any J2ME device.

A wrapper that makes the UMLS MetaMap tool (http://mmtx.nlm.nih.gov/) available as an UIMA analysis engine.

MetaboLights is a database for Metabolomics experiments and derived information. The database is cross-species, cross-techniques and covers structures and reference spectra as well as biological roles, locations and concentrations.

A computational tool to design and annotate metabolic pathways from genome annotations

The MWDB2 project is a combination of cartographic data, associated programs and Java code. Data includes coastlines, islands, lakes rivers, country and state/province boundaries. Data & code can be used on both Intel and non-Intel based computers.

An efficient Java-based Multi-agent Platform implementing the micro-agent concept µ² offering network support and multiple agent implementation languages. Detailed instructions and documentation can be found under http://www.micro-agents.net. This project has been moved to Github.

Mircrogrid market is a proof-of-concept implementation of a combinatorial heat and power double auction exchange. With this platform energy consumers and producers can buy or sell heat and power resources on demand for certain times of the day.

XMIPP is an image processing suite for 3D-reconstruction of biological specimens from transmission electron microscopy data. NOTE that stable releases (including binaries) are longer stored at Sourceforge, but are available at http://xmipp.cnb.csic.es

A Java-written MIPS simulator developed to stimulate people learning the Assembly language. It adds graphics, sounds and user interation to make writing assembly programs more interesting.

MathML to Braille translator. It's writen in Java + XSL and it uses the Saxon XSLT processor for XML transformations.

Android Mobile Phone Tracking Platform merging sourceforge projects: https://sourceforge.net/projects/gpsmapper/ & https://sourceforge.net/projects/gpsinfo/ Android mobile GPS/Network location sended to server. Two kinds of viewers: 1. Google maps 2. NASA WorldWind

Mobile Robotics is a java project developing wireless communication using bluetooth between a hand-held (palm, cellular phone) to a Lego Mindstorm device. We intend to bypass the limitations of the IR tower creating a truly wireless mindstorm.

Modama is a new software project for processing and analysing 2d detector data (images) provided by any available detectors, mainly SAX and WAX.

Model-Driven Embedded Systems Design Environment for the Industrial Automation Sector: The aim of this open source initiative is to provide a multi-domain model-driven embedded systems design approach for Industrial Automation and Control Systems.

Molevolve is a Java library for running a Genetic Algorithm to model the 3-dimensional structures of peptide chains from amino-acid sequences. Client code can specify its own peptide chain model, fitness functions and GA operations. Requires JDK 1.5.

MoonPlanner is a Java calendar that allow to view moon's phases, moon's signs (constellations in which the moon is), and show the part of the plant corresponding to each sign (flower, fruit, leaf or root). For every calendar's day the user can attach notes (that are stored in a persistent database). At the startup the program will remind you if there will be notes for current day. Timezones and localizations (En, IT) are supported by the application. This calendar is usable between 1900 and 2020. This tool can be useful to plan gardening tasks or to view some astrology informations. References and requirements: - JRE/JDK version 1.5 or later must be installed on host computer. - UI are made using SWT by Eclipse (see http://www.eclipse.org/swt/). - The software uses AstroLib library version 1.1.5 provided by Mark Huss to calculate Moon's phases (http://mhuss.com/AstroLib.html). - The software uses Apache Derby 10.9.1.0 (http://db.apache.org/derby/) as embedded database.

MpcReader retrieves comet and asteroid orbital data in MPC format from the web and store it on your computer in different formats. The data is fetched from the MPC. The main job of MpcReader is to convert plain MPC data to the format needed for KStar

In addition to computing co-expression clusters, Maccu fishes potential co-expressed genes for a given bait set. All results can be further processed via graph-level operations so that we can compare graphs based on different reference data.

MultiDEILD is an Android application that can aid you in having lucid dreams by using special alarms and light flashes. MultiDEILD is also available as a Windows scriptable software. It can turn on your pc, ring alarms, and put your pc in sleep mode again.

A simulation environment for 2D robots to interact and perform tasks in. Meant to be educational and demonstrate emergent behaviors. No download necessary! See demos on project website!

(Former project name was Geo5.) It was never easier to share your position with friends. Just open http://jfellow.net/geo5/ and see you and your friends on a map. (http://jfellow.net/geo5/ is a test server. You can download and install your own server. It's open source.) - Build groups, all group members see each other automatically. - No registration, no installation, no spyware. - Advanced: Tracks, routing (planned). It's about privacy. Reclaim the internet from authorities and companies!

MyOscar is a personal health record system. This project contains both the data storage server as well as a client / patient UI for accessing the data. Other data access clients can be / have been written, the Oscar EMR is one such client. The sourceforge myoscar-users@lists.sourceforge.net is the main mail list and form of communications for this project. The sourceforge Tickets system is the bug and feature tracker for this project. The sourceforge git repository is not the working code repository, it is only a publishing/readonly code repository for this project. The working repository is actually a gerrit repository at https://source.oscartools.org:8080, once commits are reviewed and approved and merged into the trunk, they are automatically mirrored to the sourceforge git repository (usually with in seconds). SourceForge GIT issues have been resolved and all source code repositories are syncing with our gerrit server again (2013-05-08).