Open Source Java Scientific/Engineering Software - Page 61

This project was moved to https://code.google.com/p/evidence-bucket/

Eviewbox is a java imaging suite, its purpose is to view and spread native DICOM medical images and allowing for 2D reconstructions. EViewbox applet will allow to see the DICOM images on every platform.

Lightweight and extensible Java framework for evolutionary (genetic) algorithms.

EvoPromoter is a JAVA application that detects promoter regions in aligned nucleotide sequences using phylogenetic hidden markov models.

The evocomp software models complex systems via novel mathematical and computational models informed by biological metaphors, with the aim of designing and controlling complex systems.

Evoker is a graphical tool for plotting genotype intensity data in order to assess quality of genotype calls. It implements a compact, binary format which allows rapid access to data, even with hundreds of thousands of observations. PLEASE NOTE: This source repository is no longer active. See the github link above for the latest version.

The Evolutionary Environment (EvENet) provides a P2P Network for guiding the evolution of Software Services and Service Compositions over time. This evolution is based on knowledge sharing and optimised using GA and Agent Systems. It is part of the DBE.

The Evolutionary Environment Simulator (EvESimulator) is an agent-based economy simulation framework which provides a broader view on evolutionary aspects within a Digital Business Ecosystem.

A set of tools for population level and agent based modeling in evolutionary game theory.

Don't hard-code data-structures for Artificial Intelligence (AI). Evolve them (and control flow) as cycles of arrays in arrays with size constraints based on other array sizes (at specific index) in terms of range, multiply, exponent, or permutation. No working code yet. Whats there now is an extension of GigaLineCompile which would become part of Human AI Net, but there are other projects to finish before I can come back to this one.

Java package to study a clustering model described in the paper \"Novel Clustering Algorithm Based Upon Games on Evolving Network\" by Q. Li, Z. Chen, Y. He and J-P. Jiang (in arxiv: http://arxiv.org/pdf/0812.5064v1), generalizations and similar issues.

Ex-Crawler is divided into 3 subprojects (Crawler Daemon, distributed gui Client, (web) search engine) which together provide a flexible and powerful search engine supporting distributed computing. More informations: http://ex-crawler.sourceforge.net

The ExactFDR software package is an improvement of permutation-based False Discovery Rate (FDR) estimation methods that takes advantage from exact p-value computations for analyzing Genome-wide association studies data

Experiment Description Language is an XML application that provides a standard way of describing scientific experiments.

experimaestro is an experiment manager, and is composed of (1) a job scheduler that handles dependencies and locking (2) a modular experiment description framework, that allows easy description of the various parts of an experiments.

Infrastructure for experiments in economics.

Experimental utilities in Java for geographic information and remote sensing in environmental science. Seagis is build on top of Geotools 2, which is an OpenGIS implementation. Some Seagis classes may move to Geotools 2 when (and if) they become mature e

A web-based experiment presenting system to present images to subjects along with a question and to record their responses

An Expert Search System for Enterprise Search based on the Information Retrieval Vector Space Model. Our model builds a weighted profile for each candidate and keeps all the documents, thus allowing to retrieve both people and documents together.

A platform for the integration of deterministic and stochastic models, for the simulation of the integrated models and for interactive exploration of the model behaviour.

Exporter - A database and dataminig tool (coded in Java)

A class generator for schemas defined in EXPRESS language. It can generate class definitions for Java, C#, C++ etc.

Expression4J (Math Expression Parser) is a java framework used to manage mathematic expression stored in String object like "f(x,b)=2*x-cos(b)" or "g(x,y)=f(y,x)*-2". Expression gramar can be define by user (add new operator or type ...)

ExpressionOasis is a java based framework for evaluating the various type of expressions like arithmatic, logic expression etc. The framework is flexible enough to define any new grammer rules or operators.

The project is moved to GitHub : https://github.com/bekisz/exreco/ Exreco is a agent based platform for the simulation and study of the Darwinian evolutionary process. It aims to support the exploration of genetically rooted phenomena like - aging (programmed cell death) - sexual and asexual reproduction - altruism of individuals - spread of diseases The typical way of using Exreco starts by defining the behavior of your replicators ( agents that can reproduce and evolve over time), and defining the environment of these replicators. If it is all done you can let it run observing what kind of genes prevail over time. The tool typically runs the same world (experiment scenario) over and over again to have a statistical understanding of the various replicator strategies.