Open Source Java Scientific/Engineering Software - Page 58

FrEAK, the Free Evolutionary Algorithm Kit, is a toolkit to design and analyze evolutionary algorithms, written in Java.

Fractalator is a flexible, java based fractal generator.

A simulator that allows programs written in Java for a National Instruments CRIO to be run on a local computer by overloading the libraries provided by WPI. Some things we've fixed since 0.1a: Kinect no longer throws an exception upon instantiation, the Watchdog is usable, array elements can now be edited in the gui, and lots of under the hood reimplementation to replace native methods. DISCLAIMER: this is not like the diamond bullet studios simulation, this only simulates how the hardware would act, so that code can be tested. It is not our goal to provide a program that allows simulation for strategy testing, nor will it ever be.

Microchip's PIC simulator. Simulates a circuit with dispositives as a P16F84 microcontroller, LEDs, displays and LCDs. Extensible with plugins.

An interpreter for the G-code language, which can control a 3-axis Cartesian positioning system (ie for a CNC milling machine) which has electronics compatible with the RepRap project.

G.A.V. (Graph Algorithm Visualizer) is a tool that visualizes algorithms from graph theory. A step-by-step visualization from each different algorithm allows the user to understand the particular algorithm very easily.

GAME stays for Generic Architecture based on Multiple Experts. Its main purpose is to make easy prototyping, test and release of prediction systems. Released by IASC group, university of Cagliari

This is part of the GAMES Project, which consists of a set of innovative methodologies and Open Source ICT tools for designing and managing energy efficiency in IT Service Centres. The ESMI is the monitoring and sensing infrastructure which allows the fine-grained measurement and provides both an event-based and a real-time stream of data conveying information about the energy consumption in the key points of the overall system. It is completed by a set of Nagios plugin and an assessment tool which implements some green Performance Indicators and integrates data mining with the self adaptive controllers of the entire framework.

GELLO is an ANSI-accredited HL7 standard for creating computable, unambiguous clinical queries. This project creates an open source compiler and client-server IDE. Projects are stored in a subversion repository, and created by the RCP based client.

GESPA (GEnomic Single nucleotide Polymorphism Analyzer) is a bioinformatics tool for classifying Nonsynonymous Single Nucleotide Polymorphisms (nsSNPs). GESPA predicts if a nsSNP is pathogenic using reports from literature and various algorithms to assess conservation in orthologous and paralogous protein alignments. Using reports from literature, GESPA is also able to predict the phenotype of a nsSNP with high accuracy. The software can be used clinically to determine if observed nsSNPs are associated with disease. A host of annotations are provided: orthologous and paralogous multiple sequence alignments, UCSC annotations, reports detailing conservation of a nsSNP in alignments, and links to external nsSNP and gene information such as relevant publications. GESPA is connected to a constantly updating SQL server allowing for fast data retrieval. NOTE: REQUIRES Java 1.7.0+. Port 1433 cannot be blocked by firewall, network, or antivirus program. Please cite: http://tinyurl.com/oj7p84a

GFinisher is an application tools for refinement and finalization of prokaryotic genomes assemblies using the bias of GC Skew to identify assembly errors and organizes the contigs/scaffolds with genomes references. contact dievalg at gmail.com

The GIS Metadata Manager is a simple Java-based desktop application to manage files from geographic information systems (GIS) in a specified directory by grouping files into records, adding metadata and searching the metadata to find files.

A plugin for the VANTED system, called Glyph-based Link Exploration of Pathways (GLIEP). It helps to guide the navigation and exploration process of interconnected pathway visualization as well as insight into the overall interconnectivity.

A java application that shows speed, direction and position in mobile phones that has a built in gps. Primary for use in boat or car, but hiking is fine too. To install just download the newest gpspal_x_x_x.jar file and send it to your phone.

GPSMobile is a java library providing access to GPS devices from mobile devices like PDAs or mobile phones. It uses J2ME Personal Profile (JSR 062) specification. The core of the library uses GPSTool package from Dinopolis. A demo application is provided.

There are many good programs to manage gpx tracks from my sport activities. My favorite one is gps-prune to view gps tracks on a map and make changes. However, I was missing a simple tool to store summary information about a gpx track into a database to keep track of my training efforts. That's why I created GPXReport. GPXReport is a desktop solution which is written in Java and should run on most computers. The program can read a gpx-file and calculate basics information such as: - overall and moving time - distance (km), - average and max speed - time, km uphill and downhill It automatically classifies the acitvity as hiking, MTB or race bike. Each track information can be added to a Sqlite database. The program can display all information of the database and summarize it by activity.

Galapago is a Java application that uses LOGO-like scripting to render mathematical-biological structures.

The Garmin GPS Tool is a Java Swing application that allows Garmin GPS users to connect their units to computers and use the Swing application as a tool for downloading and visualizing waypoint, track, and route data on a global scale.

Gavrog stands for "Generation, Analysis and Visualization of Reticular Ornaments using Gavrog". It is a Java library together with a suite of interactive applications for the study of periodic net-like structures in space and their applications.

GeXpert is an expert system that can be used for genetics and metabolic pathway analysis. GeXpert can help Biotechnologists do their work faster, reducing the time required for performing, analyzing and storing the results of Bioinformatics research.

Small stand-alone Java utility to visualize and compute drive train translation ratios for derailleur geared bicycles. Features load/save of data, chainline quality visualization, and scale drawing of the drive train with measures.

The Genalyze log analyzer, a simple yet highly extensible framework for parsing log files, was designed for parsing T-Server log files generated by Genesys contact center software platform, yet is generic and easy enough to adapt for other log formats.

The General Intensional Programming System (GIPSY) consists in three modular sub-systems: The General Intensional Programming Language Compiler (GIPC) ; the General Eduction Engine (GEE), and the Intensional Run-time Programming Environment (RIPE).

GJAL is a collection of generic class definitions in GJ/Generic Java/JSR-014 that outlines algebraic structures such as Monoids, SemiGroups, Groups, Rings, Fields and various Domains.

GeneticThesaurus enables analysis of genetic variation in repetitive regions. See project wiki for details.