Open Source Java Scientific/Engineering Software - Page 60

HeartBit is a GPL Java/SuperWaba app to interact with the Polar heartrate monitoring watches. This software is targeted at PalmOS and Windows users. It aims at offering the features found in the Precision Performance app. from Polar.

Hedgehog is a Java library for simple distributed computing. Your code instantiates a server, post jobs, and is notified when clients return the results. The clients need not have the job classes. Hedgehog uses JmDNS, XStream, XML-RPC, and Jetty.

Pure Java IDE for brainfuck, which follows the principle of KISS.

HidroSIG is a GIS that supports raster and vectorial maps with modules oriented to the hydrological analysis, time series, remote sensing and more. It has been made 100% in java using VisAD for data visualization and using MySQL to storage all data.

A library of data objects that simulate mathematical neurons, including classic Hodgkin-Huxley neurons and theta neurons.

In consanguineous families, as a result of inheriting the same genomic segments through both parents, the individuals have stretches of their genomes that are homozygous. This situation leads to the prevalence of recessive diseases among the members of these families. Homozygosity mapping is based on this observation and several recessive disease genes have been discovered with the help of this technique in consanguineous families. The researchers typically use SNP arrays to determine the homozygous regions and then search for the disease gene by sequencing the genes within this candidate disease loci. Recently, the advent of next generation sequencing enables the concurrent identification of homozygous regions and the detection of mutations relevant for diagnosis, using data from a single sequencing experiment. In this respect, we have developed a novel tool that identifies homozygous regions using deep sequence data. Using *.vcf files as an input file, our program identifies the majo

HorsePower is J2ME scientific calculator optimised for use on mobile phones, with the appearance of the classic range of Hewlett Packard calculators. (MIDP 1.0 & CLDC 1.0)

This game is the generalization of the classic Battleship game to a n-dimensional grid. Rules are the same as the classic game and boats are always unidimensional, but ships can be set in a linear (1D), square (2D), cube (3D) on n-hypercubic grid.

Graphical User Interface for a software used to assess adaptive evolution in protein-coding genes. Makes use of several known bioinformatics software. IMPACT is free software, targeted to the scientific community. Maldonado E, Dutheil JY, da Fonseca RR, Vasconcelos V, Antunes A (2011) IMPACT: Integrated Multiprogram Platform for Analyses in ConTest. Journal of Heredity, 102 (3): 366-369. doi: https://doi.org/10.1093/jhered/esr003

This is an IQM plugin to compute the FFI index for binary digital images. This index represents a value for the compactness of an object. FFI is the difference between fractal dimensions of the area and its boundary. Fractal dimensions are computed with the popular Box counting method or the Pyramid method. Details can be found in: Andronache etal. Fractal analysis for studying the evolution of forests, Chaos, Solitons & Fractals, 2016, Vol 91, 310-318. Installation instruction: Copy newest jar file to the "Plugins" directory which should be located in the directory of your local IQM main application. IQM: https://sourceforge.net/projects/iqm/ Authors of this plugin: Ion Andronache, University of Bukarest, Romania Daniel Peptenatu, University of Bukarest, Romania Helmut Ahammer, Medical University of Graz, Austria

A web based information management system for macromolecular (protein) crystallography X-ray experiments. This project has moved to https://forge.ill.eu/projects/ispyb

IdentityTrust is a library that allows you to express trust criteria for identity providers and the attributes that they can assert in a fine granular and customizable way.

A set of applications that can generate and tabulate paper surveys. Includes simple graphical programs for the common user. Has interchangeable back-end components for the enthusiast.

IntEnz is the name for the Integrated relational Enzyme database. IntEnz contains data curated and approved by the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (NC-IUBMB).

IXML (short for "Interface XML") is a Java framework to create Swing user interfaces using XML files that describe the UI.

The goal of this project is to develop open-source libraries for interval arithmetic and interval constraints in a wide variety of languages and for a wide variety of platforms. Demos and documentation will also be developed. provided.

Intrepid Bioinformatic's Integrative Genomics Viewer (IGV) modifications for viewing NGS files on IGV with data located on remote servers, accessed by web services.

J-Ref is a general reference manager for anyone that has to manage long list of literature references for write ups, theses, dissertations, etc. List of references can be sorted, searched and the style of reference can be sorted before being cut and past

An all Java J2EE home weather station and website project. Currently based on Davis Weather Monitor II but will evolve to support other devices, servers, and databases. The project has evolved towards a fully developed Runy on Rails solutions.

GPS-equipped cell phone works as bluetooth NMEA-183 GPS receiver

"Java Artificial Intelligence Markup Language PAD" is a tool that manages ProgramD AI (on local or remote machines) and AIML files with real-time previews and it provides a network support to test AI capabilities over many network protocols.

Japrosim is a java library for both discrete event and continuous simulation. GUI for modeling and automatic code generation are offered. An explanation module is integrated. Models are described in XML and owl for interoperability.

JAS-mine is a Java platform that aims at providing a unique simulation tool for discrete-event simulations, including agent-based and microsimulation models. With the aim to develop large-scale, data-driven models, the main architectural choice of JAS-mine is to use whenever possible standard, open-source tools already available in the software development community. It has built-in utilities for communicating with an underlying relational database. In addition, the platform provides standard tools which are frequently used both in agent-based modelling and dynamic microsimulations, like design of experiments (DOE), run-time monitoring and visualization with plots and graphs (GUI), I/O communication and statistical analysis. JAS-mine source code can be found on GitHub, with the core repository at: https://github.com/jasmineRepo/JAS-mine-core and the GUI repository at: https://github.com/jasmineRepo/JAS-mine-gui

The JCAMP-DX project is the reference implemention of the IUPAC JCAMP-DX spectroscopy data standard.

The program system JCASim is a general-purpose system for simulating cellular automata in Java. It includes a stand-alone application and an applet for web presentations.