Search Results for "align"
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Showing 15 open source projects for "align"
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GrammarChecker
Grammar checker for any text field via keyboard shortcut using LLM
...The main window provides a user-friendly interface where you can assign any specific keyboard shortcut for triggering grammar checks or adjust the prompt requirements to align with your specific writing needs, such as translating text into different language or something else. -
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PGMania
Astrophotography image & video processor. Full processing cycle
PGMania is a universal package for processing deep space images. The program provides wide and unique functionality, a powerful and flexible tool with a clear and user-friendly interface. The program performs all image processing cycles for astrophotography, including filtering, cleaning, aligning, image calibrating, stacking, post-processing, format conversion, cropping, rotations, many special operations and much more. PGMania is environmentally friendly - it does not clutter your photos... -
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cppcam
cppcam is a 3D CAD app for drafting G-Code toolpaths for CNC Routers
Use cppcam to generate great art with your CNC router. 1. import model 2. position model with resize or align 3. Add toolpaths as needed and configure each with: a. set tool size b. set stock area (work area) c. configure the path(s) for the chosen toolpath type -
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COPEread
Connecting Overlapped Pair-End Reads
COPE (Connecting Overlapped Pair-End reads) is a method to align and connect the illumina sequenced Pair-End reads of which the insert size is smaller than the sum of the two read length.The connected reads can be used in genome assembly, resequencing and transcriptome research. The full citation: COPE: An accurate k-mer based pair-end reads connection tool to facilitate genome assembly Binghang Liu; Jianying Yuan; Siu-Ming Yiu; Zhenyu Li; Yinlong Xie; Yanxiang Chen; Yujian Shi; Hao Zhang; Yingrui Li; Tak-Wah Lam; Ruibang Luo Bioinformatics (2012) 28(22): 2870-2874; doi: 10.1093/bioinformatics/bts563 -
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RT-alignment
Graph-based time alignment algorithms for multiple LC-MS datasets
...For large-scale studies, multiple instruments or multi-week experiments are often required, which exacerbates the problem. We present a new graph-based time alignment algorithm that can align these less similar LC-MS maps, which cannot be effectively handled by existing methods. -
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CUDAlign
CUDAlign is a tool that aligns huge DNA sequences in CUDA capable GPUs
CUDAlign is a tool able to align pairwise DNA sequences of unrestricted size in CUDA GPUs, using the Smith-Waterman algorithm combined with Myers-Miller. It produces the optimal alignment of 1 million base sequences in 45 seconds using a GTX 560 Ti. Many optimizations are being developed for this software. Look at the following papers for detailed information: [1] Edans Sandes, Alba Melo. -
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This is a collection of (hopefully) useful productivity enhancements of Mentor Graphics IC-Station tools
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Hierachical_DNAcoder
An Hierachical Approach to Multi-Reference Genome compression
...We present a novel multi-reference based genome compression method with a hierachical structure. Our approach works for the de facto standard alignment format (i.e., BAM) compression that is the pressing need at present. We align new sequences to a reference sequence using SOAP3, a GPU-based aligning software, and summarize mapping properties and information for exact mapped reads. To increase the exact aligning rate, we also realign the approximately mapped and unmapped reads by changing the reference sequence or shortening the read length. Meanwhile, we further the study using “lossy” quality values through k-means clustering scheme and find its minute effect on downstream applications. ... -
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NeedlemanWunsch
Fast global sequence alignment for the masses!
MOVED TO GITHUB: https://github.com/noporpoise/seq-align Global optimal sequence alignment using the Needleman-Wunsch algorithm. Aligns DNA, RNA, protein sequence and more! See our sister project local alignment using Smith-Waterman: http://sourceforge.net/projects/smithwaterman/ -
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AlignMe
Alignment of membrane proteins
AlignMe is a C++ program to align distantly related membrane proteins by including several input parameters. Alignments based on substitution matrices, Position Specific Matrices (PSSMs), hydrophobicity scales and any kind of profiles (membrane predictions, secondary structure predictions etc.). -
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SmithWaterman
Fast local sequence alignment for the masses!
MOVED TO GITHUB: https://github.com/noporpoise/seq-align An implementation of the Smith-Waterman local sequence alignment algorithm. See our sister project global alignment using Needleman-Wunsch: http://sourceforge.net/projects/needlemanwunsch/ -
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C++ library for protein sequence profile to profile alignment. Implementing numerous known alignment variants in a flexible and manageable architecture.
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indi-mount-tools
Small personal tools to control indi mounts
...As of now, there is an "handcontroller" GUI application (Pad), which includes the use of a joypad device, and a helper for polar aligning an equatorial mount (Polar Align). Besides a small catalog browser/reader (Catalogs), and a more specific Align Viewer GUI application aimed at displaying current alignment data for the EQMod INDI driver. -
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Cinema 4D plugins previously maintained and hosted at http://www.defcon-x.de/c4d-plugins. Includes the following: * Advanced Atom Array (AAA) * Align to Vector Tool (AVT) * Flange Maker
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Converts Gerber R-274X compliant files to G-Code suitable for a CNC solder paste dispenser. The user can input real world coordinates to align the board before code creation. Also supports batch jobs of multiple boards on the same work area.
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