COPEread

COPE (Connecting Overlapped Pair-End reads) is a method to align and connect the illumina sequenced Pair-End reads of which the insert size is smaller than the sum of the two read length.The connected reads can be used in genome assembly, resequencing and transcriptome research.
The full citation:
COPE: An accurate k-mer based pair-end reads connection tool to facilitate genome assembly
Binghang Liu; Jianying Yuan; Siu-Ming Yiu; Zhenyu Li; Yinlong Xie; Yanxiang Chen; Yujian Shi; Hao Zhang; Yingrui Li; Tak-Wah Lam; Ruibang Luo
Bioinformatics (2012) 28(22): 2870-2874; doi: 10.1093/bioinformatics/bts563

Features

connect overlapped pair-end read

Project Activity

See All Activity >

License

GNU General Public License version 3.0 (GPLv3)

Follow COPEread

COPEread Web Site

Other Useful Business Software

Go from Code to Production URL in Seconds

Cloud Run deploys apps in any language instantly. Scales to zero. Pay only when code runs.

Skip the Kubernetes configs. Cloud Run handles HTTPS, scaling, and infrastructure automatically. Two million requests free per month.

Try it free

Rate This Project

User Ratings

5.0 out of 5 stars

★★★★★

★★★★

★★★

★★

★

ease 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5

features 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5

design 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5

support 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5

User Reviews

Filter Reviews:

All

heathersimmons Posted 2013-06-06

Coperead is perfect! Thanks.

1 user found this review helpful.

Additional Project Details

Operating Systems

Linux

Languages

English

Programming Language

C++

Related Categories

C++ Algorithms, C++ Bio-Informatics Software

Registered

2012-09-18

Similar Business Software

StackAI

StackAI is an enterprise AI automation platform to build end-to-end internal tools and processes with AI agents in a fully compliant and secure way. Designed for large, regulated organizations, it enables teams to automate complex workflows across operations, compliance, finance, IT, and support...

See Software
NetNut

Get ready to experience unmatched control and insights with our user-friendly dashboard tailored to your needs. Monitor and adjust your proxies with just a few clicks. Track your usage and performance with detailed statistics. Our team is devoted to providing customers with proxy solutions...

See Software
MindCloud

MindCloud is a software company that builds and maintains custom connections between your software and other platforms so you can eliminate manual data entry and start automating and scaling your business. As technology continues to advance, the modern business owner is using more and more...

See Software
HiveMQ

HiveMQ is the Industrial AI Platform helping enterprises move from connected devices to intelligent operations. Built on the MQTT standard and a distributed edge-to-cloud architecture, HiveMQ connects and governs industrial data in real time, enabling organizations to act with intelligence. With...

See Software
DbVisualizer

DbVisualizer is a universal database client for developers, DBAs, analysts, and data engineers working with relational and NoSQL databases. It provides a graphical interface for database development, SQL querying, data exploration, and database admin. The tool includes a powerful SQL editor...

See Software
Apify

Apify is a full-stack web scraping and automation platform helping anyone get value from the web. At its core is Apify Store, a marketplace with over 10,000 Actors where developers build, publish, and monetize automation tools. Actors are serverless cloud programs that extract data, automate...

See Software