BioCompUP Align

C++ library for protein sequence profile to profile alignment. Implementing numerous known alignment variants in a flexible and manageable architecture.

Features

Make sequence to sequence alignment
Make profile to sequence alignment
Make profile to profile alignment
Use three different weighting schemes in the construction of profiles
Use eleven different scoring functions used in alignments against profile Profile
Use structural information of various kinds
Use of penalty functions for linear gap
Perform global, local and semi-global alignments

Project Activity

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License

GNU General Public License version 2.0 (GPLv2)

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Additional Project Details

Languages

English

Intended Audience

Science/Research

User Interface

Console/Terminal

Programming Language

C++

Related Categories

C++ Bio-Informatics Software

Registered

2010-10-04

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