Search Results for "parallel"
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Showing 378 open source projects for "parallel"
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Dagger.jl
A framework for out-of-core and parallel execution
Dagger.jl is a framework for out-of-core and parallel computing in Julia that allows users to construct and execute dynamic task graphs. It is designed for large-scale, distributed, and memory-efficient computations. Dagger supports lazy evaluation and scheduling across multiple threads or machines, enabling high-performance workflows for data processing, scientific computing, and machine learning. -
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LAMMPS
Public development project of the LAMMPS MD software package
...LAMMPS is script-driven, so users can define simulation geometry, force fields, integration methods, output, and analysis behavior through input files. Its main value is combining broad scientific flexibility with scalable parallel performance for complex molecular and mesoscale simulations. -
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DL_POLY
General purpose classical molecular dynamics (MD) simulation software
DL_POLY is a general-purpose classical molecular dynamics simulation package developed at Daresbury Laboratory. It has evolved from older replicated-memory designs into a distributed-memory code suitable for modern parallel computing. The software can be built in serial form or with MPI for larger simulations. It is used for molecular modeling in chemistry, physics, materials science, and condensed-matter research. DL_POLY provides a mature simulation environment for studying atomic and molecular systems under classical force-field descriptions. Its main value is offering a long-running, research-grade MD package with a strong focus on parallel execution and general scientific use. -
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Brax
Massively parallel rigidbody physics simulation
Brax is a fast and fully differentiable physics engine for large-scale rigid body simulations, built on JAX. It is designed for research in reinforcement learning and robotics, enabling efficient simulations and gradient-based optimization. -
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Nelson
The Nelson Programming Language
...The software supports complex numbers, multidimensional arrays, sparse matrices, tables, and dictionaries. Users can create two-dimensional and three-dimensional visualizations and develop custom graphical interfaces. Its parallel computing capabilities use OpenMP, SIMD, and MPI to improve processing performance. Nelson also integrates with Python, Julia, C, and Fortran code. Additional tools include an interactive debugger, profiler, package manager, and embedded code editor, making it suitable for research and numerical simulation. -
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RoboDojo
Sim-and-Real Benchmark for Evaluation of Robot Manipulation
...The benchmark measures generalization, memory, precision, long-horizon planning, and open-ended manipulation capabilities. Its Isaac Sim environments support rigid, articulated, and deformable objects across diverse scenarios. Parallel simulation enables researchers to evaluate multiple tasks and environments efficiently. RoboDojo integrates with XPolicyLab to test different robotic policies through a unified interface. Reproducible configurations, controlled random seeds, and standardized scoring support consistent comparisons. This repository also includes an experimental Isaac Sim 6.1 migration whose complete benchmark compatibility remains unverified. -
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MathCode
A Frontier Mathematical Coding Agent
MathCode is a terminal-based AI coding assistant focused on mathematical formalization and theorem proving. It is designed to transform plain-language mathematical reasoning into verified Lean 4 code and formal proofs. The project combines AI agents with Lean Language Server Protocol integration, allowing it to inspect compiler feedback, search for lemmas, and iteratively repair failed proof attempts. It supports an agentic proving workflow where the system behaves more like an interactive... -
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HOOMD-blue
Molecular dynamics and Monte Carlo soft matter simulation on GPUs
...The software is especially useful for nano-scale, colloidal, polymer, soft matter, and materials simulations. Its Python interface lets users build simulation and analysis workflows using familiar scientific Python tools. HOOMD-blue supports efficient parallel execution and has been used for large-scale GPU-based simulations. Its main value is combining a flexible Python user experience with strong GPU performance for modern particle simulation research. -
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OpenFOAM
The Open Source CFD Toolbox
OpenFOAM - The Open Source CFD Toolbox. OpenFOAM is a generic, programmable software tool for Computational Fluid Dynamics (CFD). For more information, see: - Main Website: https://openfoam.org - C++ Source Documentation: https://cpp.openfoam.org - Issue (Bug) Tracking: https://bugs.openfoam.org - User Guide: https://cfd.direct/openfoam/user-guide -
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Monte Carlo eXtreme (MCX)
Physically accurate and validated GPU ray-tracer
MCX is a GPU-accelerated, general-purpose, physically-accurate and feature-rich 3-D light transport simulator. It is one of the fastest simulators because it can use tens of thousands of GPU threads to simulate photons in parallel. -
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Octave Forge
A collection of packages providing extra functionality for GNU Octave
Octave Forge is a central location for collaborative development of packages for GNU Octave. The Octave Forge packages expand Octave's core functionality by providing field specific features via Octave's package system. See https://octave.sourceforge.io/packages.php for a list of all available packages. GNU Octave is a high-level interpreted language, primarily intended for numerical computations. It provides capabilities for the numerical solution of linear and nonlinear problems, and... -
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ParDRe
Parallel tool to remove duplicate DNA reads
ParDRe is a parallel tool to remove duplicate reads. Duplicate reads can be seen as identical or nearly identical sequences with some mismatches. This tool will let the users to avoid the analysis of not necessary reads, reducing the time of subsequent procedures with the dataset (e.g., assemblies, mappings, etc.). The tool is implemented with MPI in order to exploit the parallel capabilities of multicore clusters. -
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librsb
A shared memory parallel sparse matrix library including Sparse BLAS.
librsb is a library for sparse matrix computations featuring the Recursive Sparse Blocks (RSB) matrix format. This format allows cache efficient and multi-threaded (that is, shared memory parallel) operations on large sparse matrices. The most common operations necessary to iterative solvers are available, e.g.: matrix-vector multiplication, triangular solution, rows/columns scaling, diagonal extraction / setting, blocks extraction, norm computation, formats conversion. The RSB format is especially well suited for symmetric and transposed multiplication variants. ... -
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SUNTANS
Unstructured-grid, nonhydrostatic ocean model
The Stanford unstructured-grid, nonhydrostatic, parallel coastal ocean model. For simulation of nonhydrostatic flows at high resolution in estuaries and coastal seas. Requires a grid generator and ParMETIS (if run in parallel). -
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MPIGeneNet
Parallel tool to construct gene co-expression networks
MPIGeneNet is a parallel tool to construct gene co-expression networks using Pearson’s correlation and Random Matrix Theory (RMT). This tool takes as input a matrix with the expression values (a float value) for different genes observed from several samples. It is a parallelization of RMTGenNet tool (https://github.com/spficklin/RMTGeneNet). MPIGeneNet integrates the whole procedure of creating the in one program, which makes the tool easier to work with (the users only have to launch the application once) and avoids writing/reading from intermediate files among the modules. -
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GromacsProSuite
Graphical User Interface for Gromacs
...The software automates tasks such as topology generation, solvation, ion addition, minimization, equilibration, and production runs while executing GROMACS commands in the background. Built-in monitoring tracks CPU, RAM, and disk usage to ensure stable performance during parallel processing. Beyond simulation execution, it includes advanced trajectory processing and analysis tools such as RMSD, RMSF, SASA, clustering, PCA, hydrogen-bond analysis, Ramachandran plots, and FEL mapping. With integrated visualization and plotting utilities, it offers a unified platform for researchers, educators, and students to perform complete MD workflows efficiently and reproducibly. ... -
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CPSeis is the open-source version of ConocoPhillips' former seismic processing system. Uses Fortran 90 and C/C++ layers for I/O. The new system was designed using an MPI-parallel model and works well on Linux clusters or on individual workstations.
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caesar-lisflood
CAESAR-Lisflood landscape evolution model
Caesar Lisflood is a geomorphological / Landscape evolution model that combines the Lisflood-FP 2d hydrodynamic flow model (Bates et al, 2010) with the CAESAR geomorphic model to simulate erosion and deposition in river catchments and reaches over time scales from hours to 1000's of years. These sourceforge pages provide downloads of the .exe and the source code for CAESAR-lisflood and instructions and additional documentation can be found in the Wiki tab. These include a full description... -
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DEEP
Differential Evolution Entirely Parallel Method
The Differential Evolution, introduced in 1995 by Storn and Price, considers the population, that is divided into branches, one per computational node. The Differential Evolution Entirely Parallel method takes into account the individual age, that is defined as the number of iterations the individual survived without changes. The introduced improvements are: (I) allow several oldest individuals to be overwritten by the same number of best ones in the population, (II) new selection rule uses several objective functions in offspring evaluation. ... -
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Optimizer_sovkov
Constructing and optimizing general mathematical and physical models
...Currently, the main focus of these is computational quantum mechanics, analysis and simulation of molecular spectra, and general-purpose approximants. The package provides the most reliable modern strategies for linear and non-linear model optimization, regularization, and hypothesis tests. Parallel computing is supported. -
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FFTW++ is a C++ header class for the FFTW Fast Fourier Transform library that automates memory allocation, alignment, planning, wisdom, and communication on both serial and parallel (OpenMP/MPI) architectures. In 2D and 3D, hybrid dealiasing of convolutions substantially reduces memory usage and computation time. Wrappers for C, Python, and Fortran are included.
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DEVS-Suite Simulator
Component, CA, and CCA models; superdense time, ETL DB, testing, etc.
Integrated component-based and cellular automata (CA) Parallel DEVS simulator. Version: 8.0 [Aug `26], 7.0 [Jan `23], 6.1 [Apr. `21], 6 [Sep. `20] , 5 [Jul. `19], 4 [Mar. `18], 3 [Apr. `15], 2.1 [Feb. `09], 2 [`03] See PVM: Visual Persistent Hierarchical Component-based Modeler (https://acims.asu.edu/persistent-visual-modeler/ ) and CoSMoSim: hierarchical visual modeling, database model repository, families of models, statecharts, partial-code generation for XML/DEVS-Suite models (https://acims.asu.edu/software/cosmos/). -
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MarDRe
MapReduce-based tool to remove duplicate DNA reads
MarDRe is a de novo MapReduce-based parallel tool to remove duplicate and near-duplicate DNA reads through the clustering of single-end and paired-end sequences from FASTQ/FASTA datasets (plain or compressed with Gzip/BZip2). This tool allows bioinformaticians to avoid the analysis of not necessary reads, reducing the time of subsequent procedures with the dataset. (e.g., assemblies, mappings, etc.). -
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FEMM_PMSM_GUI_V2 1.FIX Parallel emf voltage problem and ind Calculation 2.add Arkkio torque Calculation 3.Support for segmentation models (sliding band mode only) 4.Supports iron loss calculation(Supported in full electrical cycle and sliding band modes; not supported in standard mode) #Add new FEMM_DXF_SET_Driver FEMM PMSM Motor GUI — V1 A multi-functional desktop GUI that automates finite-element (FEMM) analysis of permanent-magnet synchronous motors (PMSM/IPM).
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octave-ocl
OpenCL support for GNU Octave
The Package is installable in GNU Octave and offers OpenCL support for parallelization of numerical computations. It is most effective for computations which are based on large vectors or n-dimensional arrays of numbers, and mostly (but not limited to) identical element-wise operations. The user can select which available OpenCL hardware and drivers are to be used. The Package offers new numeric data types with many built-in operations (e.g., overloaded operators). It is flexibly...
