Search Results for "sam"
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Showing 27 open source projects for "sam"
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Ship Agents FasterGemini Enterprise Agent Platform lets you rapidly build, scale, govern and optimize production-ready agents grounded in your organization's data. The platform enables developers to build custom or pre-built agents for virtually any use case. New customers get $300 in free credits.
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MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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BBMap
BBMap short read aligner, and other bioinformatic tools.
...Dedupe: Simplifies assemblies by removing duplicate or contained subsequences that share a target percent identity. Reformat: Reformats reads between fasta/fastq/scarf/fasta+qual/sam, interleaved/paired, and ASCII-33/64, at over 500 MB/s. BBDuk: Filters, trims, or masks reads with kmer matches to an artifact/contaminant file. ...and more! -
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BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data. Please cite the BRIG paper if BRIG is used to generate figures for publications: NF Alikhan, NK Petty, NL Ben Zakour, SA Beatson (2011) BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons, BMC Genomics, 12:402. PMID: 21824423
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RECOIL
Retro Computer Image Library
Retro Computer Image Library decodes Amiga, Amstrad CPC, Apple II, Atari 8-bit, Atari Portfolio, Atari ST/TT/Falcon, BBC Micro, Commodore 64, Commodore 16/116/Plus4, Commodore 128, Electronika BK, FM Towns, HP 48, Macintosh 128K, MSX, NEC PC-80/88/98, Oric, SAM Coupe, Sharp X68000, Tandy 1000, Timex 2048, TRS-80, TRS-80 Color Computer, ZX81 and ZX Spectrum picture formats. The project contains a simple viewer, plug-ins for general-purpose image viewers and editors, and an everything-to-png converter. -
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ASLoader
Arduino upload tool
This little Java tool allows you to upload a compiled sketch to your Arduino without using the IDE. Currently the protocols Stk500v1, Stk500v2, Avr109 and SAM-BA are implemented. That means the * Arduino Due, * Arduino Duemilanove, * Arduino Leonardo, * Arduino Leonardo ETH, * Arduino Mega, * Arduino Micro, * Arduino Nano, * Arduino Pro Mini, * Arduino Uno and maybe some others are supported. -
Our Free Plans just got better! | Auth0You asked, we delivered! Auth0 is excited to expand our Free and Paid plans to include more options so you can focus on building, deploying, and scaling applications without having to worry about your security. Auth0 now, thank yourself later.
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miRDeep*
MiRDeep*
Please cite: An, J., Lai, J., Lehman, M.L. and Nelson, C.C. (2013) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res, 41, 727-737. We will create index for you if you tell us your interested species (j.an@qut.edu.au). download command line version "MDS_command_line_Vxx.zip" clicking "Browse All Files" please find miRPlant in sourceforge for plant miRNA prediction. -
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123FASTQ
An intuitive and efficient tool for preprocessing Illumina FASTQ reads
123FASTQ performs all the pre-processes of Illumina next-generation sequencing reads (FASTQ files) easier than ever. Download the quick user manual for the latest version: https://dl.adbioinformatics.net/NGSNeeds/myTools/123Fastq_v1.3_Manual.pdf Authors: Milad Eidi, Samaneh Abdolalizadeh, Mohammad Hossein Nassirpour Supervisors: Javad Zahiri, PhD University of California San Diego Masoud Garshasbi, PhD Tarbiat Modares University, Tehran, Iran If you use 123FASTQ,... -
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FastQC
A quality control analysis tool for high throughput sequencing data
FastQC is a quality control analysis tool designed to spot potential problems in high throughput sequencing datasets. Its goal is to provide a simple way by which to check the quality of raw sequence data coming from high throughput sequencing pipelines. It does this by running a modular set of analyses on one or more raw sequence files in fastq or bam format. It then produces a report summarizing the results, and highlighting any areas where the library may appear unusual. This should then... -
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ophcrack
A Windows password cracker based on rainbow tables
Ophcrack is a Windows password cracker based on a time-memory trade-off using rainbow tables. This is a new variant of Hellman's original trade-off, with better performance. It recovers 99.9% of alphanumeric passwords in seconds. -
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endpoint-health
Standalone web application allowing to monitor end points availability
...This project is licensed under the WTFPL (Do What The Fuck You Want To Public License, Version 2) Copyright © 2017 spypunk spypunk@gmail.com This work is free. You can redistribute it and/or modify it under the terms of the Do What The Fuck You Want To Public License, Version 2, as published by Sam Hocevar. See the COPYING file for more details. -
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SeqPig
Use Apache Pig to process your large sequencing datasets!
...It provides import and export functions for file formats commonly used for sequencing data, as well as a collection of Pig user-defined-functions (UDF’s) to help process aligned and unaligned sequence data. Currently SeqPig supports BAM/SAM, FastQ and Qseq input and output. For more information see the manual at http://seqpig.sourceforge.net/ -
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Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework with the Picard SAM JDK, and command line tools similar to SAMtools. The file formats currently supported are BAM, SAM, FASTQ, FASTA, QSEQ, BCF, and VCF. For a longer high-level description of Hadoop-BAM, refer to the article "Hadoop-BAM: directly manipulating next generation sequencing data in the cloud" in Bioinformatics Volume 28 Issue 6 pp. 876-877, available online at: http://dx.doi.org/10.1093/bioinformatics/bts054 Note that the library part of Hadoop-BAM is mainly for developers with experience in using Hadoop. ...
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SuRankCo
Supervised Ranking of Contigs in de novo Assemblies
...Renard (http://www.biomedcentral.com/1471-2105/16/240/abstract) PLEASE NOTE, it is recommended to read the paper and the readme.txt file before using SuRankCo. Update Jun2015: * Minor changes to enable BAM support. Update Feb2014: * Added support for FASTA/SAM assemblies in addition to ACE/FASTQ(QUAL). NOTE: features of FASTA/SAM assemblies do not include BaseCount, BaseSeqmentCount and ContigQualities yet. -
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picard
A set of tools for working with high-throughput sequencing data
A set of tools (in Java) for working with next generation sequencing data in the SAM/BAM format. Note that development has moved to GitHub at https://github.com/broadinstitute/picard and support is available on the GATK forum at http://gatkforums.broadinstitute.org/categories/ask-the-team -
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rStreamer
Shoutcast radio streaming source software
A software that serves a similar purpose and gives similar options like SAM, i.e. playlist/queue admimistration, manipulation of the sounds while playing like mixing external sound sources (microphone) into the live stream, keep all song metadata in a relational DB to allow fast lookup by author/name, etc... with some nice extensions planned that I badly miss in SAM. -
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Sam Proxy
Created for student use only
This is SamProxy Version Created For learning use only I am not responsible for any copyright actions on me. Please click below link for donating me, it wont charge anything but just a click http://linkshrink.net/7BkEMo You will get kucch more software from me on same site as return else just share this software with someone else Thank you, cause i m nothing without you -
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cerrla
The CERRLA algorithm, developed by Sam Sarjant
This project contains the files required to run the Cross-Entropy Relational Reinforcement Learning Agent (CERRLA) algorithm. Note that a copy of the JESS rules engine will also be required. -
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WindTunnel
A 3D wind tunnel simulator created in 2008 by a group of undergrads
...The user is able to insert objects into the windtunnel and view a (very) rough simulation of the wind flowing around it. View the Wiki for detailed instructions on how to use it. Created by: Sam Sarjant, Kias Hafiz, David Spooner, Sam McIntosh, Kieran Ryan, Yong Chun Fu -
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SAM is an experimental discovery protocol for Web services for use in small highly dynamic MANETs, where the standardized Web services discovery mechanism are unsuitable for use. (Version 1.1 used in IEEE paper DOI 10.1109/GLOCOMW.2010.5700225)
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The Open Protocol for Access Control Identification and Ticketing with privacY, is a standard suite of Key Establishment and Authentication protocols based on ECC and AES, for optimized contactless transactions and simple PKI based Key management.
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FEASST, FesterHead's Extremely Awesome SAM and SHOUTcast Tools, is a collection of tools and utilities for Internet radio stations using SAM and SHOUTcast technology.
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This project has moved. Please see http://projects.darkaslight.com/ SAM is a near real-rime Snort alert monitor. SAM provides many ways to indicate that you may be experiencing an intrusion attempt on your network.
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MagmaChat is a peer to peer chating protocal. The M.C. protocal was developed at North Carolina State University. Further refinements and releases are produced by Sam Scott (Codinglife), the developer of M.C.
