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Showing 3 open source projects for "sam"
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ASLoader
Arduino upload tool
This little Java tool allows you to upload a compiled sketch to your Arduino without using the IDE. Currently the protocols Stk500v1, Stk500v2, Avr109 and SAM-BA are implemented. That means the * Arduino Due, * Arduino Duemilanove, * Arduino Leonardo, * Arduino Leonardo ETH, * Arduino Mega, * Arduino Micro, * Arduino Nano, * Arduino Pro Mini, * Arduino Uno and maybe some others are supported. -
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Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework with the Picard SAM JDK, and command line tools similar to SAMtools. The file formats currently supported are BAM, SAM, FASTQ, FASTA, QSEQ, BCF, and VCF. For a longer high-level description of Hadoop-BAM, refer to the article "Hadoop-BAM: directly manipulating next generation sequencing data in the cloud" in Bioinformatics Volume 28 Issue 6 pp. 876-877, available online at: http://dx.doi.org/10.1093/bioinformatics/bts054 Note that the library part of Hadoop-BAM is mainly for developers with experience in using Hadoop. ...
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