Search Results for "clustering algorithm"
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Showing 64 open source projects for "clustering algorithm"
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Clustering.jl
A Julia package for data clustering
Methods for data clustering and evaluation of clustering quality. -
2
HDBSCAN
A high performance implementation of HDBSCAN clustering
HDBSCAN - Hierarchical Density-Based Spatial Clustering of Applications with Noise. Performs DBSCAN over varying epsilon values and integrates the result to find a clustering that gives the best stability over epsilon. This allows HDBSCAN to find clusters of varying densities (unlike DBSCAN), and be more robust to parameter selection. In practice this means that HDBSCAN returns a good clustering straight away with little or no parameter tuning -- and the primary parameter, minimum cluster size, is intuitive and easy to select. ... -
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Machine learning basics
Plain python implementations of basic machine learning algorithms
...The repository includes notebooks that demonstrate classic algorithms such as linear regression, logistic regression, k-nearest neighbors, decision trees, support vector machines, and clustering techniques. Each notebook typically combines explanatory text, Python code, and visualizations to illustrate how the algorithm operates and how it can be applied to datasets. -
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Machine Learning Octave
MatLab/Octave examples of popular machine learning algorithms
This repository contains MATLAB / Octave implementations of popular machine learning algorithms, along with explanatory code and mathematical derivations, intended as educational material rather than production code. Implementations of supervised learning algorithms (linear regression, logistic regression, neural nets). The author’s goal is to help users understand how each algorithm works “from scratch,” avoiding black-box library calls. Code written so as to expose and comment on mathematical steps. The repository includes clustering, regression, classification, neural networks, anomaly detection, and other standard ML topics. Does not rely heavily on specialized toolboxes or library shortcuts. -
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5
sktime
A unified framework for machine learning with time series
...It features dedicated time series algorithms and tools for composite model building such as pipelining, ensembling, tuning, and reduction, empowering users to apply an algorithm designed for one task to another. -
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Homemade Machine Learning
Python examples of popular machine learning algorithms
homemade-machine-learning is a repository by Oleksii Trekhleb containing Python implementations of classic machine-learning algorithms done “from scratch”, meaning you don’t rely heavily on high-level libraries but instead write the logic yourself to deepen understanding. Each algorithm is accompanied by mathematical explanations, visualizations (often via Jupyter notebooks), and interactive demos so you can tweak parameters, data, and observe outcomes in real time. The purpose is pedagogical: you’ll see linear regression, logistic regression, k-means clustering, neural nets, decision trees, etc., built in Python using fundamentals like NumPy and Matplotlib, not hidden behind API calls. ... -
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Machine learning algorithms
Minimal and clean examples of machine learning algorithms
Machine learning algorithms is an open-source repository that provides minimal and clean implementations of machine learning algorithms written primarily in Python. The project focuses on demonstrating how fundamental machine learning methods work internally by implementing them from scratch rather than relying on high-level libraries. This approach allows learners to study the mathematical and algorithmic details behind widely used models in a transparent and readable way. The repository... -
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Smile
Statistical machine intelligence and learning engine
Smile is a fast and comprehensive machine learning engine. With advanced data structures and algorithms, Smile delivers the state-of-art performance. Compared to this third-party benchmark, Smile outperforms R, Python, Spark, H2O, xgboost significantly. Smile is a couple of times faster than the closest competitor. The memory usage is also very efficient. If we can train advanced machine learning models on a PC, why buy a cluster? Write applications quickly in Java, Scala, or any JVM... -
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ML for Beginners
12 weeks, 26 lessons, 52 quizzes, classic Machine Learning for all
ML-For-Beginners is a structured, project-driven curriculum that teaches foundational machine learning concepts with approachable math and lots of code. Organized as a multi-week course, it mixes short lectures with labs in notebooks so learners practice regression, classification, clustering, and recommendation techniques on real datasets. Each lesson aims to connect the algorithm to a relatable scenario, reinforcing intuition before diving into parameters, metrics, and trade-offs. The repository includes quizzes, solutions, and instructor materials to make the content usable in classrooms or self-study. It emphasizes ethical considerations and model evaluation—accuracy is not the only metric—so students learn to validate and communicate results responsibly. ... -
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10
AngClust
AngClust: Angle-based feature clustering for time series
.... * We defined three indicators to identify significant clusters: (i) the fluctuation degree of expression levels, (ii) homogeneity, and (iii) the degree of clustering while the clusters are functionally significant. * The clustering outcome of our algorithm (AngClust) is better than the currently most popular STEM algorithm. * AngClust can be used to analyze any short time series gene expression profiles. -
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Alink
Alink is the Machine Learning algorithm platform based on Flink
Alink is Alibaba’s scalable machine learning algorithm platform built on Apache Flink, designed for batch and stream data processing. It provides a wide variety of ready-to-use ML algorithms for tasks like classification, regression, clustering, recommendation, and more. Written in Java and Scala, Alink is suitable for enterprise-grade big data applications where performance and scalability are crucial. -
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pattern_classification
A collection of tutorials and examples for solving machine learning
...It includes notebooks and guides that demonstrate data preprocessing, feature extraction, model training, and evaluation techniques used in machine learning workflows. The repository also covers algorithms such as Bayesian classification, logistic regression, neural networks, clustering methods, and ensemble models. In addition to algorithm tutorials, the project contains supplementary resources such as dataset collections, visualization examples, and links to recommended books and talks. These materials are designed to support both theoretical understanding and practical experimentation with machine learning tools. -
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Python ML Jupyter Notebooks
Practice and tutorial-style notebooks
...Many notebooks include explanations of algorithm behavior, data preparation techniques, and evaluation methods for machine learning models. The project also includes examples that demonstrate how to apply machine learning to real-world datasets and practical business problems. -
14
MScDB
A Mass Spectrometry Centric Protein Sequence Database for Proteomics
...The core modules of MScDB are an in-silico proteolytic digest and a peptide centric clustering algorithm that groups protein sequences that are indistinguishable by mass spectrometry. -
15
DeepCluster
Deep Clustering for Unsupervised Learning of Visual Features
DeepCluster is a classic self-supervised clustering-based representation learning algorithm that iteratively groups image features and uses the cluster assignments as pseudo-labels to train the network. In each round, features produced by the network are clustered (e.g. k-means), and the cluster IDs become supervision targets in the next epoch, encouraging the model to refine its representation to better separate semantic groups. -
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Machine Learning From Scratch
Bare bones NumPy implementations of machine learning models
ML-From-Scratch is an open-source machine learning project that demonstrates how to implement common machine learning algorithms using only basic Python and NumPy rather than relying on high-level frameworks. The goal of the project is to help learners understand how machine learning algorithms work internally by building them step by step from fundamental mathematical operations. The repository includes implementations of algorithms ranging from simple models such as linear regression and... -
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weka-MTreeClusterer
Flat clustering algorithm based on MTrees implemented for weka.
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18
spark-ml-source-analysis
Spark ml algorithm principle analysis and specific source code
...The project aims to help developers and data scientists understand how distributed machine learning algorithms are implemented and optimized inside the Spark ecosystem. Instead of providing a runnable software system, the repository focuses on explaining algorithm principles and examining the underlying source code used in Spark’s machine learning package. The repository contains detailed analyses of various algorithms including classification, regression, clustering, dimensionality reduction, and recommendation systems. Each section discusses both the mathematical principles behind the algorithms and how Spark implements them in a distributed computing environment. ... -
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Clustering by Shared Subspaces
Grouping Points by Shared Subspaces for Effective Subspace Clustering
These functions implement a subspace clustering algorithm, proposed by Ye Zhu, Kai Ming Ting, and Mark J. Carman: "Grouping Points by Shared Subspaces for Effective Subspace Clustering", Published in Pattern Recognition Journal at https://doi.org/10.1016/j.patcog.2018.05.027 -
20
NNC
Nuclear Norm Clustering
We present Nuclear Norm Clustering (NNC), an algorithm that can be used in different fields as a promising alternative to the k-means clustering method, and that is less sensitive to outliers. The NNC algorithm requires users to provide a data matrix M and a desired number of cluster K. We employed simulate annealing techniques to choose an optimal L that minimizes NN(L). -
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spark-msna
Algorithm on Spark for aligning multiple similar DNA/RNA sequences
The algorithm uses suffix tree for identifying common substrings and uses a modified Needleman-Wunsch algorithm for pairwise alignments. In order to improve the efficiency of pairwise alignments, an unsupervised learning based on clustering technique is used to create a knowledge base to guide them. -
22
Point Symmetry Clustering
Point Symmetry Clustering Approach Using Differential Evolution
Implementation of Point Symmetry-based Automatic Clustering Approach Using Differential Evolution Using bug fixed KD tree nearest neighbor search from https://github.com/CristianDallos/kmeansclustering. (It is also modified to search for multiple nearest points instead only for one.) Used those academic works for algorithm implementation: http://cs.cug.edu.cn/teacherweb/gwy/Publication/ISICA-09.pdf http://www.isical.ac.in/~sanghami/ieeetkde_cameraready.pdf http://www.softcomputing.net/smca-paper1.pdf 1. ... -
23
popt4jlib
Parallel Optimization Library for Java
popt4jlib is an open-source parallel optimization library for the Java programming language supporting both shared memory and distributed message passing models. Implements a number of meta-heuristic algorithms for Non-Linear Programming, including Genetic Algorithms, Differential Evolution, Evolutionary Algorithms, Simulated Annealing, Particle Swarm Optimization, Firefly Algorithm, Monte-Carlo Search, Local Search algorithms, Gradient-Descent-based algorithms, as well as some well-known... -
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DGRLVQ
Dynamic Generalized Relevance Learning Vector Quantization
Some of the usual problems for Learning vector quantization (LVQ) based methods are that one cannot optimally guess about the number of prototypes required for initialization for multimodal data structures i.e.these algorithms are very sensitive to initialization of prototypes and one has to pre define the optimal number of prototypes before running the algorithm. If a prototype, for some reasons, is ‘outside’ the cluster which it should represent and if there are points of a different... -
25
QSdpR
Viral Quasispecies Reconstruction software based on QSdpR algorithm
This is a viral quasispecies reconstruction software for quasispecies assembly problem on mRNA viruses, which is based on a correlation clustering approach and uses semidefinite optimization framework. The software accepts a reference genome, a NGS read set aligned to this reference and set of SNP locations in the form of a vcf file and outputs an optimal set of reconstructed species genomes which describes the underlying viral population.
