Chemical reaction network and systems biology interface
Component, CA, and CCA models; superdense time, DB repo, testing, etc.
A simulation program for thyroid homeostasis.
Model, simulate, and analyze biochemical systems using one tool.
Class library for computational cybernetics
PySCeS is the Python Simulator of Cellular Systems
The software for systems biology/pharmacology modeling
Kinetic Monte Carlo simulation of the in-vitro Kai Circadian clock
high performance SBML JIT compiler & simulation engine
Accurate and efficient Java library that simulates biological models
MultiCellular Data Standards Project
Multiscale Neuroscience and Systems Biology Simulator
Create lipid-bilayer models of arbitrary geometry.
Monte Carlo Simulations of Asymmetric Exclusion Processes
An implementation for the Top-Down pitch model by E.Balaguer et al.
mean first passage times and node occupancies calculations