Extracting Patterns and Identifying co-expressed Genes from RNA-Seq
Non-Coding RNA PROfiling from sRNA-seq
Tool for miRNA-seq analysis in C++
RNA modification detection by RT signatures in deep sequencing data
A strand aware pipeline for accurate quantification of miRNAs/isomiRs
Inference of Genome Accessibility in Bacteria from ChIP-seq data.
search for patterns in files on d64 images
Predicts strains of genomes in Nextgen seq alignment file (sam/bl8)
Find ping-pong signatures like a pro
predicts inversions in Strand-seq data
Control free ChIP-seq peak caller
Tests for enrichment of GWAS SNPs in epigenetic datasets
Assessing mRNA integrity directly from RNA-Seq data
Allelic imbalance meter (Allim), a new tool for measuring allele speci
single-cell RNA-seq analysis software
Fast and more random implementations of java.util.Random.
Web-interface Application for DE pipelines in RNA-seq studies