Pathoscope

This page is here for archival purpose. Please visit github for the latest version of the software: https://github.com/pathoscope


PathoScope takes next-generation sequencing reads from a mixture sample and predicts which genomes are present. We use a Bayesian framework combined with an initial reference-based alignment to assign reads to the correct genome of origin.

Pathoscope 2.0:
Wiki:
http://sourceforge.net/p/pathoscope/wiki/Home/
Tutorial:
http://sourceforge.net/projects/pathoscope/files/pathoscope2.0_v0.02_tutorial.pdf

Clinical Pathoscope version: http://sourceforge.net/p/pathoscope/wiki/clinical_pathoscope/

PathoQC download: http://sourceforge.net/projects/pathoscope/files/pathoqc_v0.1.4.tar.gz/download

Publications: http://www.microbiomejournal.com/content/2/1/33
http://www.biomedcentral.com/1471-2105/15/262
http://genome.cshlp.org/content/23/10/1721

Support:

PS: Please send an email to mani2012 at bu dot edu if you have any questions.