QuickMIRSeq Icon

QuickMIRSeq

Add a Review
2 Downloads (This Week)
Last Update:
Download QuickMIRSeq.tgz
Browse All Files

Screenshots

Description

We designed and implemented a pipeline for fast and accurate quantification of both known miRNAs and isomiRs by joint processing multiple samples. QuickMIRSeq reconciles its implementation with the unique nature of miRNAs.All analyses results are organized in a user friendly manner, accessible via a web interface, and can be drilled down interactively by investigators or analysts to conduct further investigation and discovery. QuickMIRSeq is a powerful and flexible open source tool for accurate quantification of known miRNAs/isomiRs.

The software package, and the test run results for miRNA-seq dataset GSE64977(human), GSE65920(mouse) and GSE60900(rat) can be downloaded directly from https://sourceforge.net/projects/quickmirseq/files/, and are also available online https://baohongz.github.io/QuickMIRSeq/

QuickMIRSeq Web Site

Categories

Features

  • Joint mapping of multiple samples
  • Strand aware
  • Quantification of both miRNAs and isomiRs
  • Accurancy and reliablity of detected miRNAs
  • User friendly summary report

KEEP ME UPDATED

Other Useful Business Software

Resolve application issues 65% faster Icon

Find and resolve application problems before they become incidents

Resolve application issues 65% faster Icon
Minimize application downtime by resolving application issues 65% faster. Monitor applications across on-premises, hybrid, and public cloud infrastructures from a single console. Set up intelligent application performance alerts to find and fix issues before they impact business services and end-users. Monitor 200+ applications from a single dashboard—no more wasting time between multiple tools and custom scripts.
Write a Review

User Reviews

Be the first to post a review of QuickMIRSeq!

Additional Project Details

Registered

2016-11-02

Thanks for helping keep SourceForge clean.

Screenshot instructions:
Windows
Mac
Red Hat Linux   Ubuntu

Click URL instructions:
Right-click on ad, choose "Copy Link", then paste here →
(This may not be possible with some types of ads)

More information about our ad policies
X

Briefly describe the problem (required):

Upload screenshot of ad (required):
Select a file, or drag & drop file here.

Please provide the ad click URL, if possible:

Get latest updates about Open Source Projects, Conferences and News.

Sign up for the SourceForge newsletter:

JavaScript is required for this form.

No, thanks