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Visualization and analysis of functional modules in biochem. networks

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MonaLisa uses Petri net representation to model and analyse biochemical networks. Here, all reactions of a pathway are modeled by their metabolites and reactions. These are represetend by different kind of vertices, metabolites as circles and reactions as rectangles. The Petri net formalism offers a rich variety of mathematical anaylisis aproaches to check the model for structual faults or to identify biological modules. Furthermore, MonaLisa can visualize the computed results, so that a quick visual inspection is possible. This will help especially for handeling big models.

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  • Modeling of Petri nets
  • Analysation of Petri nets
  • Visualization of analysis results
  • Find functional models in Petri nets

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Programming Language

C, Java


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