MUMmer

MUMmer is a modular system for the rapid whole genome alignment of finished or draft sequence. This package provides an efficient suffix tree library, seed-and-extend alignment, SNP detection, repeat detection, and visualization tools.

Project Samples

ordered and oriented multiplot of finished vs. draft seqs

percent-identity color coded dotplot of a promer alignment

unordered multiplot of finished vs. draft sequence alignment

percent identity plot (bot) compared with gene models (top)

Project Activity

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License

Artistic License

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MUMmer Web Site

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User Reviews

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elenostapen Posted 2012-10-22

Great project! Thanks for amazing work!
attilaatalar Posted 2012-10-22

Very helpful, fast and easy product!
svetnickol Posted 2012-10-21

This is a wonderful project. TNX!
oid-2888560 Posted 2010-12-03

great set of tools
torst Posted 2010-05-02

No genome bioinformatican should be without this tool.

Additional Project Details

Operating Systems

Linux, BSD

Intended Audience

Science/Research, Advanced End Users

User Interface

Command-line

Programming Language

Perl, C++, C

Related Categories

Perl Bio-Informatics Software, C++ Bio-Informatics Software, C Bio-Informatics Software

Registered

2005-03-05

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