NAMDTheoretical and Computational Biophysics Group
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Photo51Fearless League
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Related Products
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NAMD:
About
NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. Based on Charm++ parallel objects, it scales from desktop and laptop computers to high-end parallel platforms, hundreds of cores for typical simulations, and beyond 500,000 cores for the largest simulations. NAMD is built for researchers who need to simulate large molecular systems efficiently while preserving compatibility with widely used molecular modeling workflows. It uses the popular molecular graphics program VMD for simulation setup and trajectory analysis, and it is file-compatible with AMBER, CHARMM, and X-PLOR. It is designed to support biomolecular simulations involving proteins, membranes, nucleic acids, solvents, ions, and other molecular systems where atomic interactions and time-dependent motion need to be studied in detail.
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Photo51:
About
Photo51 is a web-based molecular biology suite for designing and analyzing DNA and protein sequences. It supports plasmid design, automated feature annotation, virtual cloning, PCR primer design and virtual agarose gel electrophoresis. Researchers can import sequence files and use an integrated genome browser to explore reference genomes, inspect gene views and export sequences into projects. Additional tools include guide RNA design with PAM visualization, pairwise and multiple sequence alignment, Sanger chromatogram viewing, protein alignment and reverse translation. Photo51 also provides shared team workspaces and version history for collaborative projects. Its open-access genome browser supports genome exploration, while subscriptions provide additional editing and analysis features. It is aimed at researchers, educators and biotechnology teams working with molecular biology workflows.
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NAMD:
Platforms Supported
Windows
Supported
Mac
Supported
Linux
Supported
Cloud
Not Supported
On-Premises
Not Supported
iPhone
Not Supported
iPad
Not Supported
Android
Not Supported
Chromebook
Not Supported
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Photo51:
Platforms Supported
Windows
Supported
Mac
Supported
Linux
Not Supported
Cloud
Supported
On-Premises
Not Supported
iPhone
Not Supported
iPad
Not Supported
Android
Not Supported
Chromebook
Supported
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NAMD:
Audience
Biophysicists, biologists, and simulation researchers requiring a biomolecular simulation tool for desktops, clusters, GPUs, and supercomputers
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Photo51:
Audience
For researchers, educators and biotech businesses looking for a collaborative molecular biology software suite.
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NAMD:
Support
Phone Support
Not Supported
24/7 Live Support
Not Supported
Online
Supported
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Photo51:
Support
Phone Support
Not Supported
24/7 Live Support
Not Supported
Online
Supported
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NAMD:
API
Offers API
Not Supported
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Photo51:
API
Offers API
Not Supported
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NAMD:
Screenshots and Videos |
Photo51:
Screenshots and Videos |
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NAMD:
Pricing
Free
Free Version
Supported
Free Trial
Not Supported
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Photo51:
Pricing
€8.95/month
Academic access is €8.95/month; commercial use is €60/month.
Free Version
Supported
Free Trial
Supported
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NAMD:
Reviews/
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Photo51:
Reviews/
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NAMD:
Training
Documentation
Supported
Webinars
Not Supported
Live Online
Not Supported
In Person
Not Supported
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Photo51:
Training
Documentation
Supported
Webinars
Not Supported
Live Online
Supported
In Person
Supported
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NAMD:
Company InformationTheoretical and Computational Biophysics Group
Founded: 2006
United States
www.ks.uiuc.edu/Research//namd/
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Photo51:
Company InformationFearless League
Founded: 2023
Netherlands
fearlessleague.com
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NAMD:
Alternatives |
Photo51:
Alternatives |
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NAMD:
Categories |
Photo51:
Categories |
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NAMD:
Integrations
No info available.
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Photo51:
Integrations
No info available.
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NAMD:
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Photo51:
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