NAMD

NAMD

Theoretical and Computational Biophysics Group
Photo51

Photo51

Fearless League
NAMD Photo51

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NAMD:

About

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. Based on Charm++ parallel objects, it scales from desktop and laptop computers to high-end parallel platforms, hundreds of cores for typical simulations, and beyond 500,000 cores for the largest simulations. NAMD is built for researchers who need to simulate large molecular systems efficiently while preserving compatibility with widely used molecular modeling workflows. It uses the popular molecular graphics program VMD for simulation setup and trajectory analysis, and it is file-compatible with AMBER, CHARMM, and X-PLOR. It is designed to support biomolecular simulations involving proteins, membranes, nucleic acids, solvents, ions, and other molecular systems where atomic interactions and time-dependent motion need to be studied in detail.
Photo51:

About

Photo51 is a web-based molecular biology suite for designing and analyzing DNA and protein sequences. It supports plasmid design, automated feature annotation, virtual cloning, PCR primer design and virtual agarose gel electrophoresis. Researchers can import sequence files and use an integrated genome browser to explore reference genomes, inspect gene views and export sequences into projects. Additional tools include guide RNA design with PAM visualization, pairwise and multiple sequence alignment, Sanger chromatogram viewing, protein alignment and reverse translation. Photo51 also provides shared team workspaces and version history for collaborative projects. Its open-access genome browser supports genome exploration, while subscriptions provide additional editing and analysis features. It is aimed at researchers, educators and biotechnology teams working with molecular biology workflows.
NAMD:

Platforms Supported

Windows Supported
Mac Supported
Linux Supported
Cloud Not Supported
On-Premises Not Supported
iPhone Not Supported
iPad Not Supported
Android Not Supported
Chromebook Not Supported
Photo51:

Platforms Supported

Windows Supported
Mac Supported
Linux Not Supported
Cloud Supported
On-Premises Not Supported
iPhone Not Supported
iPad Not Supported
Android Not Supported
Chromebook Supported
NAMD:

Audience

Biophysicists, biologists, and simulation researchers requiring a biomolecular simulation tool for desktops, clusters, GPUs, and supercomputers
Photo51:

Audience

For researchers, educators and biotech businesses looking for a collaborative molecular biology software suite.
NAMD:

Support

Phone Support Not Supported
24/7 Live Support Not Supported
Online Supported
Photo51:

Support

Phone Support Not Supported
24/7 Live Support Not Supported
Online Supported
NAMD:

API

Offers API Not Supported
Photo51:

API

Offers API Not Supported
NAMD:

Screenshots and Videos

Photo51:

Screenshots and Videos

NAMD:

Pricing

Free
Free Version Supported
Free Trial Not Supported
Photo51:

Pricing

€8.95/month
Academic access is €8.95/month; commercial use is €60/month.
Free Version Supported
Free Trial Supported
NAMD:

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software
Photo51:

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software
NAMD:

Training

Documentation Supported
Webinars Not Supported
Live Online Not Supported
In Person Not Supported
Photo51:

Training

Documentation Supported
Webinars Not Supported
Live Online Supported
In Person Supported
NAMD:

Company Information

Theoretical and Computational Biophysics Group
Founded: 2006
United States
www.ks.uiuc.edu/Research//namd/
Photo51:

Company Information

Fearless League
Founded: 2023
Netherlands
fearlessleague.com
NAMD:

Alternatives

Photo51:

Alternatives

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NAMD:
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NAMD:
Photo51:
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NAMD:
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Photo51:
Evo Designer

Evo Designer

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NAMD:
Photo51:
NAMD:

Categories

Photo51:

Categories

Bioinformatics Supported
NAMD:

Integrations

No info available.
Photo51:

Integrations

No info available.
NAMD:
Claim NAMD and update features and information
Claim NAMD and update features and information
Photo51:
Claim Photo51 and update features and information
Claim Photo51 and update features and information