CufflinksCole Trapnell
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About
Cufflinks assemble transcripts, estimate their abundances and test for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one, taking into account biases in library preparation protocols. Cufflinks was originally developed as part of a collaborative effort between the Laboratory for Mathematical and Computational Biology. In order to make it easy to install Cufflinks, we provide a few binary packages to save users from the occasionally frustrating process of building Cufflinks, which requires that you install the libraries. Cufflinks includes a number of tools for analyzing RNA-Seq experiments. Some of these tools can be run on their own, while others are pieces of a larger workflow.
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About
Extend awareness of the power of 3D reconstruction from images and photogrammetry by developing a C++ framework. Simplify reproducible research with easy-to-read and accurate implementation of state of the art and "classic" algorithms. OpenMVG is designed to be easy to read, learn, modify and use. Thanks to its strict test-driven development and samples, the library allows to build trusted larger systems. OpenMVG provides an end-to-end 3D reconstruction from images framework compounded of libraries, binaries, and pipelines. The libraries provide easy access to features like images manipulation, features description and matching, feature tracking, camera models, multiple-view-geometry, robust-estimation, structure-from-motion algorithms, etc. The binaries solve unit tasks that a pipeline could require scene initialization, feature detection & matching and structure-from-motion reconstruction.
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Platforms Supported
Windows
Mac
Linux
Cloud
On-Premises
iPhone
iPad
Android
Chromebook
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Platforms Supported
Windows
Mac
Linux
Cloud
On-Premises
iPhone
iPad
Android
Chromebook
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Audience
Scientists requiring a solution to analyze their RNA-Seq samples
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Audience
Anyone seeking an open multiple view geometry library for 3D computer vision and structure from motion
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Support
Phone Support
24/7 Live Support
Online
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Support
Phone Support
24/7 Live Support
Online
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API
Offers API
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API
Offers API
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Pricing
Free
Free Version
Free Trial
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Pricing
No information available.
Free Version
Free Trial
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Reviews/
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Reviews/
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Training
Documentation
Webinars
Live Online
In Person
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Training
Documentation
Webinars
Live Online
In Person
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Company InformationCole Trapnell
Founded: 2017
United States
cole-trapnell-lab.github.io/cufflinks/
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Company InformationopenMVG
github.com/openMVG/openMVG
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Integrations
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Integrations
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