Cufflinks

Cufflinks

Cole Trapnell
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+

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About

Cufflinks assemble transcripts, estimate their abundances and test for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one, taking into account biases in library preparation protocols. Cufflinks was originally developed as part of a collaborative effort between the Laboratory for Mathematical and Computational Biology. In order to make it easy to install Cufflinks, we provide a few binary packages to save users from the occasionally frustrating process of building Cufflinks, which requires that you install the libraries. Cufflinks includes a number of tools for analyzing RNA-Seq experiments. Some of these tools can be run on their own, while others are pieces of a larger workflow.

About

Extend awareness of the power of 3D reconstruction from images and photogrammetry by developing a C++ framework. Simplify reproducible research with easy-to-read and accurate implementation of state of the art and "classic" algorithms. OpenMVG is designed to be easy to read, learn, modify and use. Thanks to its strict test-driven development and samples, the library allows to build trusted larger systems. OpenMVG provides an end-to-end 3D reconstruction from images framework compounded of libraries, binaries, and pipelines. The libraries provide easy access to features like images manipulation, features description and matching, feature tracking, camera models, multiple-view-geometry, robust-estimation, structure-from-motion algorithms, etc. The binaries solve unit tasks that a pipeline could require scene initialization, feature detection & matching and structure-from-motion reconstruction.

Platforms Supported

Windows
Mac
Linux
Cloud
On-Premises
iPhone
iPad
Android
Chromebook

Platforms Supported

Windows
Mac
Linux
Cloud
On-Premises
iPhone
iPad
Android
Chromebook

Audience

Scientists requiring a solution to analyze their RNA-Seq samples

Audience

Anyone seeking an open multiple view geometry library for 3D computer vision and structure from motion

Support

Phone Support
24/7 Live Support
Online

Support

Phone Support
24/7 Live Support
Online

API

Offers API

API

Offers API

Screenshots and Videos

Screenshots and Videos

Pricing

Free
Free Version
Free Trial

Pricing

No information available.
Free Version
Free Trial

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

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Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software

Training

Documentation
Webinars
Live Online
In Person

Training

Documentation
Webinars
Live Online
In Person

Company Information

Cole Trapnell
Founded: 2017
United States
cole-trapnell-lab.github.io/cufflinks/

Company Information

openMVG
github.com/openMVG/openMVG

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Categories

Categories

Integrations

No info available.

Integrations

No info available.
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