CufflinksCole Trapnell
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Photo51Fearless League
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Related Products
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Cufflinks:
About
Cufflinks assemble transcripts, estimate their abundances and test for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one, taking into account biases in library preparation protocols. Cufflinks was originally developed as part of a collaborative effort between the Laboratory for Mathematical and Computational Biology. In order to make it easy to install Cufflinks, we provide a few binary packages to save users from the occasionally frustrating process of building Cufflinks, which requires that you install the libraries. Cufflinks includes a number of tools for analyzing RNA-Seq experiments. Some of these tools can be run on their own, while others are pieces of a larger workflow.
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Photo51:
About
Photo51 is a web-based molecular biology suite for designing and analyzing DNA and protein sequences. It supports plasmid design, automated feature annotation, virtual cloning, PCR primer design and virtual agarose gel electrophoresis. Researchers can import sequence files and use an integrated genome browser to explore reference genomes, inspect gene views and export sequences into projects. Additional tools include guide RNA design with PAM visualization, pairwise and multiple sequence alignment, Sanger chromatogram viewing, protein alignment and reverse translation. Photo51 also provides shared team workspaces and version history for collaborative projects. Its open-access genome browser supports genome exploration, while subscriptions provide additional editing and analysis features. It is aimed at researchers, educators and biotechnology teams working with molecular biology workflows.
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Cufflinks:
Platforms Supported
Windows
Supported
Mac
Supported
Linux
Supported
Cloud
Not Supported
On-Premises
Not Supported
iPhone
Not Supported
iPad
Not Supported
Android
Not Supported
Chromebook
Not Supported
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Photo51:
Platforms Supported
Windows
Supported
Mac
Supported
Linux
Not Supported
Cloud
Supported
On-Premises
Not Supported
iPhone
Not Supported
iPad
Not Supported
Android
Not Supported
Chromebook
Supported
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Cufflinks:
Audience
Scientists requiring a solution to analyze their RNA-Seq samples
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Photo51:
Audience
For researchers, educators and biotech businesses looking for a collaborative molecular biology software suite.
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Cufflinks:
Support
Phone Support
Not Supported
24/7 Live Support
Not Supported
Online
Supported
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Photo51:
Support
Phone Support
Not Supported
24/7 Live Support
Not Supported
Online
Supported
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Cufflinks:
API
Offers API
Not Supported
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Photo51:
API
Offers API
Not Supported
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Cufflinks:
Screenshots and Videos |
Photo51:
Screenshots and Videos |
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Cufflinks:
Pricing
Free
Free Version
Supported
Free Trial
Not Supported
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Photo51:
Pricing
€8.95/month
Academic access is €8.95/month; commercial use is €60/month.
Free Version
Supported
Free Trial
Supported
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Cufflinks:
Reviews/
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Photo51:
Reviews/
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Cufflinks:
Training
Documentation
Supported
Webinars
Not Supported
Live Online
Not Supported
In Person
Not Supported
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Photo51:
Training
Documentation
Supported
Webinars
Not Supported
Live Online
Supported
In Person
Supported
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Cufflinks:
Company InformationCole Trapnell
Founded: 2017
United States
cole-trapnell-lab.github.io/cufflinks/
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Photo51:
Company InformationFearless League
Founded: 2023
Netherlands
fearlessleague.com
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Cufflinks:
Alternatives |
Photo51:
Alternatives |
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Cufflinks:
Categories |
Photo51:
Categories |
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Cufflinks:
Integrations
No info available.
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Photo51:
Integrations
No info available.
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Cufflinks:
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Photo51:
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