Cufflinks

Cufflinks

Cole Trapnell
Photo51

Photo51

Fearless League
Cufflinks Photo51

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Cufflinks:

About

Cufflinks assemble transcripts, estimate their abundances and test for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one, taking into account biases in library preparation protocols. Cufflinks was originally developed as part of a collaborative effort between the Laboratory for Mathematical and Computational Biology. In order to make it easy to install Cufflinks, we provide a few binary packages to save users from the occasionally frustrating process of building Cufflinks, which requires that you install the libraries. Cufflinks includes a number of tools for analyzing RNA-Seq experiments. Some of these tools can be run on their own, while others are pieces of a larger workflow.
Photo51:

About

Photo51 is a web-based molecular biology suite for designing and analyzing DNA and protein sequences. It supports plasmid design, automated feature annotation, virtual cloning, PCR primer design and virtual agarose gel electrophoresis. Researchers can import sequence files and use an integrated genome browser to explore reference genomes, inspect gene views and export sequences into projects. Additional tools include guide RNA design with PAM visualization, pairwise and multiple sequence alignment, Sanger chromatogram viewing, protein alignment and reverse translation. Photo51 also provides shared team workspaces and version history for collaborative projects. Its open-access genome browser supports genome exploration, while subscriptions provide additional editing and analysis features. It is aimed at researchers, educators and biotechnology teams working with molecular biology workflows.
Cufflinks:

Platforms Supported

Windows Supported
Mac Supported
Linux Supported
Cloud Not Supported
On-Premises Not Supported
iPhone Not Supported
iPad Not Supported
Android Not Supported
Chromebook Not Supported
Photo51:

Platforms Supported

Windows Supported
Mac Supported
Linux Not Supported
Cloud Supported
On-Premises Not Supported
iPhone Not Supported
iPad Not Supported
Android Not Supported
Chromebook Supported
Cufflinks:

Audience

Scientists requiring a solution to analyze their RNA-Seq samples
Photo51:

Audience

For researchers, educators and biotech businesses looking for a collaborative molecular biology software suite.
Cufflinks:

Support

Phone Support Not Supported
24/7 Live Support Not Supported
Online Supported
Photo51:

Support

Phone Support Not Supported
24/7 Live Support Not Supported
Online Supported
Cufflinks:

API

Offers API Not Supported
Photo51:

API

Offers API Not Supported
Cufflinks:

Screenshots and Videos

Photo51:

Screenshots and Videos

Cufflinks:

Pricing

Free
Free Version Supported
Free Trial Not Supported
Photo51:

Pricing

€8.95/month
Academic access is €8.95/month; commercial use is €60/month.
Free Version Supported
Free Trial Supported
Cufflinks:

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software
Photo51:

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software
Cufflinks:

Training

Documentation Supported
Webinars Not Supported
Live Online Not Supported
In Person Not Supported
Photo51:

Training

Documentation Supported
Webinars Not Supported
Live Online Supported
In Person Supported
Cufflinks:

Company Information

Cole Trapnell
Founded: 2017
United States
cole-trapnell-lab.github.io/cufflinks/
Photo51:

Company Information

Fearless League
Founded: 2023
Netherlands
fearlessleague.com
Cufflinks:

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Cufflinks:
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Cufflinks:
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Cufflinks:

Categories

Photo51:

Categories

Bioinformatics Supported
Cufflinks:

Integrations

No info available.
Photo51:

Integrations

No info available.
Cufflinks:
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Claim Cufflinks and update features and information
Photo51:
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