Cufflinks

Cufflinks

Cole Trapnell
PacBio

PacBio

Pacific Biosciences (PacBio)
Cufflinks PacBio

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Cufflinks:

About

Cufflinks assemble transcripts, estimate their abundances and test for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one, taking into account biases in library preparation protocols. Cufflinks was originally developed as part of a collaborative effort between the Laboratory for Mathematical and Computational Biology. In order to make it easy to install Cufflinks, we provide a few binary packages to save users from the occasionally frustrating process of building Cufflinks, which requires that you install the libraries. Cufflinks includes a number of tools for analyzing RNA-Seq experiments. Some of these tools can be run on their own, while others are pieces of a larger workflow.
PacBio:

About

PacBio (Pacific Biosciences) is a premier life science technology company that is designing, developing and manufacturing advanced sequencing solutions to help scientists and clinical researchers resolve genetically complex problems. Our products and technologies stem from two highly differentiated core technologies focused on accuracy, quality and completeness which include our HiFi long-read sequencing and our SBB® short-read sequencing technologies. Our products address solutions across a broad set of research applications including human germline sequencing, plant and animal sciences, infectious disease and microbiology, oncology, and other emerging applications. The Revio system adds affordability, high throughput, and ease of use to a foundation of long reads, exceptional accuracy, and direct methylation detection. The Onso system is an innovative benchtop short-read DNA sequencing platform with an extraordinary level of accuracy using PacBio sequencing by binding.
Cufflinks:

Platforms Supported

Windows Supported
Mac Supported
Linux Supported
Cloud Not Supported
On-Premises Not Supported
iPhone Not Supported
iPad Not Supported
Android Not Supported
Chromebook Not Supported
PacBio:

Platforms Supported

Windows Not Supported
Mac Not Supported
Linux Not Supported
Cloud Supported
On-Premises Not Supported
iPhone Not Supported
iPad Not Supported
Android Not Supported
Chromebook Not Supported
Cufflinks:

Audience

Scientists requiring a solution to analyze their RNA-Seq samples
PacBio:

Audience

Scientists in the field of genomics looking for highly-accurate genomic analysis systems
Cufflinks:

Support

Phone Support Not Supported
24/7 Live Support Not Supported
Online Supported
PacBio:

Support

Phone Support Supported
24/7 Live Support Not Supported
Online Supported
Cufflinks:

API

Offers API Not Supported
PacBio:

API

Offers API Supported
Cufflinks:

Screenshots and Videos

PacBio:

Screenshots and Videos

Cufflinks:

Pricing

Free
Free Version Supported
Free Trial Not Supported
PacBio:

Pricing

No information available.
Free Version Not Supported
Free Trial Not Supported
Cufflinks:

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software
PacBio:

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software
Cufflinks:

Training

Documentation Supported
Webinars Not Supported
Live Online Not Supported
In Person Not Supported
PacBio:

Training

Documentation Supported
Webinars Supported
Live Online Not Supported
In Person Not Supported
Cufflinks:

Company Information

Cole Trapnell
Founded: 2017
United States
cole-trapnell-lab.github.io/cufflinks/
PacBio:

Company Information

Pacific Biosciences (PacBio)
Founded: 2004
United States
www.pacb.com/products-and-services/
Cufflinks:

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PacBio:

Alternatives

Cufflinks:
PacBio:
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Cufflinks:
PacBio:
Cufflinks:
PacBio:
Cufflinks:
PacBio:
Cufflinks:

Categories

PacBio:

Categories

LIMS Supported
Cufflinks:

Integrations

No info available.
PacBio:

Integrations

No info available.
Cufflinks:
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PacBio:
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Claim PacBio and update features and information