CufflinksCole Trapnell
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Related Products
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Biohub:
About
Biohub is an open platform for building on the world model of protein biology. It provides access to the ESM family of models, including ESMC, ESMFold2, and ESM3, along with interactive tools and developer resources for protein science research. ESMC is a state-of-the-art protein language model trained on billions of evolutionary sequences, building representations that capture fundamental mechanisms of protein structure and function. It powers functional analysis, structure prediction, protein design, and the exploration of evolutionary relationships between proteins. ESMFold2 predicts high-resolution, all-atom 3D structures of biomolecular complexes directly from sequence, with optional multiple sequence alignment input for enhanced accuracy on challenging targets. ESM3 jointly models sequence, structure, and function, enabling controllable generation of novel proteins by conditioning on any combination of these modalities.
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Cufflinks:
About
Cufflinks assemble transcripts, estimate their abundances and test for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one, taking into account biases in library preparation protocols. Cufflinks was originally developed as part of a collaborative effort between the Laboratory for Mathematical and Computational Biology. In order to make it easy to install Cufflinks, we provide a few binary packages to save users from the occasionally frustrating process of building Cufflinks, which requires that you install the libraries. Cufflinks includes a number of tools for analyzing RNA-Seq experiments. Some of these tools can be run on their own, while others are pieces of a larger workflow.
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Biohub:
Platforms Supported
Windows
Not Supported
Mac
Not Supported
Linux
Not Supported
Cloud
Supported
On-Premises
Not Supported
iPhone
Not Supported
iPad
Not Supported
Android
Not Supported
Chromebook
Not Supported
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Cufflinks:
Platforms Supported
Windows
Supported
Mac
Supported
Linux
Supported
Cloud
Not Supported
On-Premises
Not Supported
iPhone
Not Supported
iPad
Not Supported
Android
Not Supported
Chromebook
Not Supported
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Biohub:
Audience
Computational biologists and protein engineering teams that need AI models, structure prediction tools, and protein-scale datasets for discovery and design
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Cufflinks:
Audience
Scientists requiring a solution to analyze their RNA-Seq samples
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Biohub:
Support
Phone Support
Not Supported
24/7 Live Support
Not Supported
Online
Supported
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Cufflinks:
Support
Phone Support
Not Supported
24/7 Live Support
Not Supported
Online
Supported
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Biohub:
API
Offers API
Supported
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Cufflinks:
API
Offers API
Not Supported
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Biohub:
Screenshots and Videos |
Cufflinks:
Screenshots and Videos |
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Biohub:
Pricing
No information available.
Free Version
Not Supported
Free Trial
Not Supported
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Cufflinks:
Pricing
Free
Free Version
Supported
Free Trial
Not Supported
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Biohub:
Reviews/
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Cufflinks:
Reviews/
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Biohub:
Training
Documentation
Supported
Webinars
Not Supported
Live Online
Supported
In Person
Not Supported
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Cufflinks:
Training
Documentation
Supported
Webinars
Not Supported
Live Online
Not Supported
In Person
Not Supported
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Biohub:
Company InformationBiohub
Founded: 2016
United States
biohub.ai/
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Cufflinks:
Company InformationCole Trapnell
Founded: 2017
United States
cole-trapnell-lab.github.io/cufflinks/
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Biohub:
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Biohub:
Categories |
Cufflinks:
Categories |
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Cufflinks:
Integrations
ESMC
Not Supported
ESMFold2
Not Supported
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Biohub:
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Cufflinks:
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