Software to identify cavities and crevices in proteins. The goal is to be able to take a protein structure, and to differentiate between five different types of environments for each residue: buried, surface, interfacial, cavity, or crevice.

Features

  • Calculate volumes of internal cavities
  • Determine environment of ionizable residues
  • Calculate depth of burial for ionizable residues
  • Calculate packing density for ionizable residues

Project Activity

See All Activity >

License

GNU General Public License version 3.0 (GPLv3)

Follow Protein Cavity Search

Protein Cavity Search Web Site

Other Useful Business Software
Easily Host LLMs and Web Apps on Cloud Run Icon
Easily Host LLMs and Web Apps on Cloud Run

Run everything from popular models with on-demand NVIDIA L4 GPUs to web apps without infrastructure management.

Run frontend and backend services, batch jobs, host LLMs, and queue processing workloads without the need to manage infrastructure. Cloud Run gives you on-demand GPU access for hosting LLMs and running real-time AI—with 5-second cold starts and automatic scale-to-zero so you only pay for actual usage. New customers get $300 in free credit to start.
Try Cloud Run Free

Additional Project Details

Intended Audience

Science/Research

User Interface

Command-line

Programming Language

Python

Related Categories

Python Molecular Science Software, Python Bio-Informatics Software

Registered

2010-05-25