USeq Source Code

Brought to you by: biotelerock, bmilash, elainegee, scourdy, tmosbruger

Commit [r2] Maximize Restore History

Initial commit after reorganizing USeq svn

Authored by: biotelerock 2012-10-31

Browse code at this revision

Parent: [r1]

Child: [r3]

<< < 1 .. 7 8 9 10 11 .. 35 > >> (Page 9 of 35)

added	/trunk/Source/edu/utah/seq/data/RNASeqSimulator.java
added	/trunk/Source/edu/utah/seq/data/ReadCoverage.java
added	/trunk/Source/edu/utah/seq/data/RemovePointDataScores.java
added	/trunk/Source/edu/utah/seq/data/Sam2USeq.java
added	/trunk/Source/edu/utah/seq/data/Simulator.java
added	/trunk/Source/edu/utah/seq/data/SmoothingWindow.java
added	/trunk/Source/edu/utah/seq/data/SmoothingWindowIndex.java
added	/trunk/Source/edu/utah/seq/data/SmoothingWindowInfo.java
added	/trunk/Source/edu/utah/seq/data/SubSamplePointData.java
added	/trunk/Source/edu/utah/seq/data/package.html
added	/trunk/Source/edu/utah/seq/data/sam
added	/trunk/Source/edu/utah/seq/data/sam/ExampleSamUsage.java
added	/trunk/Source/edu/utah/seq/data/sam/IlluminaBasecallsToSam.java
added	/trunk/Source/edu/utah/seq/data/sam/IlluminaBasecallsToSamConverter.java
added	/trunk/Source/edu/utah/seq/data/sam/MalformedSamAlignmentException.java
added	/trunk/Source/edu/utah/seq/data/sam/PicardSortSam.java
added	/trunk/Source/edu/utah/seq/data/sam/SamAlignment.java
added	/trunk/Source/edu/utah/seq/data/sam/SamAlignmentFlags.java
added	/trunk/Source/edu/utah/seq/methylation454
added	/trunk/Source/edu/utah/seq/methylation454/Amplicon.java
added	/trunk/Source/edu/utah/seq/methylation454/BaseRead.java
added	/trunk/Source/edu/utah/seq/methylation454/CpG.java
added	/trunk/Source/edu/utah/seq/methylation454/DataLine.java
added	/trunk/Source/edu/utah/seq/methylation454/MethylationParser.java
added	/trunk/Source/edu/utah/seq/methylation454/Read.java

/trunk/Source/edu/utah/seq/data/RNASeqSimulator.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/data/ReadCoverage.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/data/RemovePointDataScores.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/data/Sam2USeq.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/data/Simulator.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/data/SmoothingWindow.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/data/SmoothingWindowIndex.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/data/SmoothingWindowInfo.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/data/SubSamplePointData.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/data/package.html Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/data/sam

Directory.

/trunk/Source/edu/utah/seq/data/sam/ExampleSamUsage.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/data/sam/IlluminaBasecallsToSam.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/data/sam/IlluminaBasecallsToSamConverter.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/data/sam/MalformedSamAlignmentException.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/data/sam/PicardSortSam.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/data/sam/SamAlignment.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/data/sam/SamAlignmentFlags.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/methylation454

Directory.

/trunk/Source/edu/utah/seq/methylation454/Amplicon.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/methylation454/BaseRead.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/methylation454/CpG.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/methylation454/DataLine.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/methylation454/MethylationParser.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/methylation454/Read.java Diff Switch to side-by-side view

<< < 1 .. 7 8 9 10 11 .. 35 > >> (Page 9 of 35)