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Initial commit after reorganizing USeq svn

biotelerock 2012-10-31

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added /trunk/.classpath
added /trunk/.project
added /trunk/Classes
added /trunk/Documentation
added /trunk/Documentation/T2Documentation
added /trunk/Documentation/T2Documentation/README.html
added /trunk/Documentation/T2Documentation/applications.html
added /trunk/Documentation/T2Documentation/cmdLnMenus.html
added /trunk/Documentation/T2Documentation/foldVsRelDiff.html
added /trunk/Documentation/T2Documentation/license.txt
added /trunk/Documentation/T2Documentation/outputFileTypeDescriptions.html
added /trunk/Documentation/T2Documentation/t2ParamFileTemplate.txt
added /trunk/Documentation/T2Documentation/usage.html
added /trunk/Documentation/USeqDocumentation
added /trunk/Documentation/USeqDocumentation/README.html
added /trunk/Documentation/USeqDocumentation/applications.html
added /trunk/Documentation/USeqDocumentation/buildingUSeqFromEclipseSVN.txt
added /trunk/Documentation/USeqDocumentation/cmdLnMenus.html
added /trunk/Documentation/USeqDocumentation/index.html
added /trunk/Documentation/USeqDocumentation/license.html
added /trunk/Documentation/USeqDocumentation/outputFileTypeDescriptions.html
added /trunk/Documentation/USeqDocumentation/releaseNotes.txt
added /trunk/Documentation/USeqDocumentation/usage.html
added /trunk/Documentation/USeqDocumentation/usageBisSeq.html
added /trunk/Documentation/USeqDocumentation/usageRNASeq.html
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/trunk/Classes
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/trunk/Documentation/T2Documentation/README.html Diff Switch to side-by-side view
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/trunk/Documentation/T2Documentation/applications.html Diff Switch to side-by-side view
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/trunk/Documentation/T2Documentation/cmdLnMenus.html Diff Switch to side-by-side view
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/trunk/Documentation/T2Documentation/foldVsRelDiff.html Diff Switch to side-by-side view
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/trunk/Documentation/T2Documentation/license.txt Diff Switch to side-by-side view
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/trunk/Documentation/T2Documentation/outputFileTypeDescriptions.html Diff Switch to side-by-side view
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/trunk/Documentation/T2Documentation/t2ParamFileTemplate.txt Diff Switch to side-by-side view
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/trunk/Documentation/T2Documentation/usage.html Diff Switch to side-by-side view
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/trunk/Documentation/USeqDocumentation/README.html Diff Switch to side-by-side view
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/trunk/Documentation/USeqDocumentation/applications.html Diff Switch to side-by-side view
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/trunk/Documentation/USeqDocumentation/buildingUSeqFromEclipseSVN.txt Diff Switch to side-by-side view
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/trunk/Documentation/USeqDocumentation/cmdLnMenus.html Diff Switch to side-by-side view
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/trunk/Documentation/USeqDocumentation/index.html Diff Switch to side-by-side view
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/trunk/Documentation/USeqDocumentation/license.html Diff Switch to side-by-side view
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/trunk/Documentation/USeqDocumentation/outputFileTypeDescriptions.html Diff Switch to side-by-side view
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/trunk/Documentation/USeqDocumentation/releaseNotes.txt Diff Switch to side-by-side view
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/trunk/Documentation/USeqDocumentation/usage.html Diff Switch to side-by-side view
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/trunk/Documentation/USeqDocumentation/usageBisSeq.html Diff Switch to side-by-side view
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/trunk/Documentation/USeqDocumentation/usageRNASeq.html Diff Switch to side-by-side view
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