USeq Source Code

Brought to you by: biotelerock, bmilash, elainegee, scourdy, tmosbruger

Commit [r2] Maximize Restore History

Initial commit after reorganizing USeq svn

Authored by: biotelerock 2012-10-31

Browse code at this revision

Parent: [r1]

Child: [r3]

<< < 1 .. 8 9 10 11 12 .. 35 > >> (Page 10 of 35)

added	/trunk/Source/edu/utah/seq/methylation454/ReadAlignParser.java
added	/trunk/Source/edu/utah/seq/methylation454/Reference.java
added	/trunk/Source/edu/utah/seq/methylation454/Sample.java
added	/trunk/Source/edu/utah/seq/methylation454/StatMethylationData.java
added	/trunk/Source/edu/utah/seq/methylation454/package.html
added	/trunk/Source/edu/utah/seq/misc
added	/trunk/Source/edu/utah/seq/misc/IntersectListWithKey.java
added	/trunk/Source/edu/utah/seq/misc/MakeUSeq.java
added	/trunk/Source/edu/utah/seq/package.html
added	/trunk/Source/edu/utah/seq/parsers
added	/trunk/Source/edu/utah/seq/parsers/AlignmentPair.java
added	/trunk/Source/edu/utah/seq/parsers/AlleleWithAlignments.java
added	/trunk/Source/edu/utah/seq/parsers/BarParser.java
added	/trunk/Source/edu/utah/seq/parsers/BaseObservation.java
added	/trunk/Source/edu/utah/seq/parsers/BedStats.java
added	/trunk/Source/edu/utah/seq/parsers/BowtieParser.java
added	/trunk/Source/edu/utah/seq/parsers/ChIPSeqChallengeSortedMaker.java
added	/trunk/Source/edu/utah/seq/parsers/CompareParsedAlignments.java
added	/trunk/Source/edu/utah/seq/parsers/Eland2Fastq.java
added	/trunk/Source/edu/utah/seq/parsers/ElandExportLine.java
added	/trunk/Source/edu/utah/seq/parsers/ElandMultiParser.java
added	/trunk/Source/edu/utah/seq/parsers/ElandParser.java
added	/trunk/Source/edu/utah/seq/parsers/ElandSequenceParser.java
added	/trunk/Source/edu/utah/seq/parsers/FilterDuplicateAlignments.java
added	/trunk/Source/edu/utah/seq/parsers/JohnsonToTag.java

/trunk/Source/edu/utah/seq/methylation454/ReadAlignParser.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/methylation454/Reference.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/methylation454/Sample.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/methylation454/StatMethylationData.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/methylation454/package.html Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/misc

Directory.

/trunk/Source/edu/utah/seq/misc/IntersectListWithKey.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/misc/MakeUSeq.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/package.html Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers

Directory.

/trunk/Source/edu/utah/seq/parsers/AlignmentPair.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/AlleleWithAlignments.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/BarParser.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/BaseObservation.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/BedStats.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/BowtieParser.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/ChIPSeqChallengeSortedMaker.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/CompareParsedAlignments.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/Eland2Fastq.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/ElandExportLine.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/ElandMultiParser.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/ElandParser.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/ElandSequenceParser.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/FilterDuplicateAlignments.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/JohnsonToTag.java Diff Switch to side-by-side view

<< < 1 .. 8 9 10 11 12 .. 35 > >> (Page 10 of 35)