USeq Source Code

Brought to you by: biotelerock, bmilash, elainegee, scourdy, tmosbruger

Commit [r2] Maximize Restore History

Initial commit after reorganizing USeq svn

Authored by: biotelerock 2012-10-31

Browse code at this revision

Parent: [r1]

Child: [r3]

<< < 1 .. 9 10 11 12 13 .. 35 > >> (Page 11 of 35)

added	/trunk/Source/edu/utah/seq/parsers/NovoalignBisulfiteParser.java
added	/trunk/Source/edu/utah/seq/parsers/NovoalignIndelParser.java
added	/trunk/Source/edu/utah/seq/parsers/NovoalignPairedParser.java
added	/trunk/Source/edu/utah/seq/parsers/NovoalignParser.java
added	/trunk/Source/edu/utah/seq/parsers/ParseIntersectingAlignments.java
added	/trunk/Source/edu/utah/seq/parsers/ParsedAlignment.java
added	/trunk/Source/edu/utah/seq/parsers/PositionLine.java
added	/trunk/Source/edu/utah/seq/parsers/PositionStringArray.java
added	/trunk/Source/edu/utah/seq/parsers/PrbFilter.java
added	/trunk/Source/edu/utah/seq/parsers/RNAEditingPileUpParser.java
added	/trunk/Source/edu/utah/seq/parsers/Sam2Fastq.java
added	/trunk/Source/edu/utah/seq/parsers/SamFixer.java
added	/trunk/Source/edu/utah/seq/parsers/SamParser.java
added	/trunk/Source/edu/utah/seq/parsers/SamTranscriptomeParser.java
added	/trunk/Source/edu/utah/seq/parsers/SoapV1Parser.java
added	/trunk/Source/edu/utah/seq/parsers/Tag2Point.java
added	/trunk/Source/edu/utah/seq/parsers/VCFLookUp.java
added	/trunk/Source/edu/utah/seq/parsers/VCFParser.java
added	/trunk/Source/edu/utah/seq/parsers/VCFRecord.java
added	/trunk/Source/edu/utah/seq/parsers/package.html
added	/trunk/Source/edu/utah/seq/useq
added	/trunk/Source/edu/utah/seq/useq/ArchiveInfo.java
added	/trunk/Source/edu/utah/seq/useq/SliceInfo.java
added	/trunk/Source/edu/utah/seq/useq/USeqArchive.java
added	/trunk/Source/edu/utah/seq/useq/USeqUtilities.java

/trunk/Source/edu/utah/seq/parsers/NovoalignBisulfiteParser.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/NovoalignIndelParser.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/NovoalignPairedParser.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/NovoalignParser.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/ParseIntersectingAlignments.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/ParsedAlignment.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/PositionLine.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/PositionStringArray.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/PrbFilter.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/RNAEditingPileUpParser.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/Sam2Fastq.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/SamFixer.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/SamParser.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/SamTranscriptomeParser.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/SoapV1Parser.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/Tag2Point.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/VCFLookUp.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/VCFParser.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/VCFRecord.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/package.html Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/useq

Directory.

/trunk/Source/edu/utah/seq/useq/ArchiveInfo.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/useq/SliceInfo.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/useq/USeqArchive.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/useq/USeqUtilities.java Diff Switch to side-by-side view

<< < 1 .. 9 10 11 12 13 .. 35 > >> (Page 11 of 35)