USeq Source Code

Brought to you by: biotelerock, bmilash, elainegee, scourdy, tmosbruger

Commit [r2] Maximize Restore History

Initial commit after reorganizing USeq svn

Authored by: biotelerock 2012-10-31

Browse code at this revision

Parent: [r1]

Child: [r3]

<< < 1 .. 5 6 7 8 9 .. 35 > >> (Page 7 of 35)

added	/trunk/Source/edu/utah/seq/analysis/multi/MappedGene.java
added	/trunk/Source/edu/utah/seq/analysis/multi/MultipleConditionRNASeq.java
added	/trunk/Source/edu/utah/seq/analysis/multi/Replica.java
added	/trunk/Source/edu/utah/seq/analysis/package.html
added	/trunk/Source/edu/utah/seq/base
added	/trunk/Source/edu/utah/seq/base/BamIntensityJoiner.java
added	/trunk/Source/edu/utah/seq/base/BamNMerIntensityParser.java
added	/trunk/Source/edu/utah/seq/base/BaseClassifier.java
added	/trunk/Source/edu/utah/seq/base/Classifier.java
added	/trunk/Source/edu/utah/seq/base/NMer.java
added	/trunk/Source/edu/utah/seq/base/SNPComparator.java
added	/trunk/Source/edu/utah/seq/base/SamAlignmentExtractor.java
added	/trunk/Source/edu/utah/seq/base/VCFParser.java
added	/trunk/Source/edu/utah/seq/base/VariantAlignment.java
added	/trunk/Source/edu/utah/seq/compression
added	/trunk/Source/edu/utah/seq/compression/CompressFasta.java
added	/trunk/Source/edu/utah/seq/data
added	/trunk/Source/edu/utah/seq/data/Bam2Bar.java
added	/trunk/Source/edu/utah/seq/data/BisSeqErrorAdder.java
added	/trunk/Source/edu/utah/seq/data/ComparatorEnrichedRegionAbsoluteScore.java
added	/trunk/Source/edu/utah/seq/data/ComparatorEnrichedRegionPosition.java
added	/trunk/Source/edu/utah/seq/data/ComparatorEnrichedRegionScore.java
added	/trunk/Source/edu/utah/seq/data/ComparatorInfoPoint.java
added	/trunk/Source/edu/utah/seq/data/ComparatorPointAscendingScore.java
added	/trunk/Source/edu/utah/seq/data/ComparatorPointDecendingScore.java

/trunk/Source/edu/utah/seq/analysis/multi/MappedGene.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/analysis/multi/MultipleConditionRNASeq.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/analysis/multi/Replica.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/analysis/package.html Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/base

Directory.

/trunk/Source/edu/utah/seq/base/BamIntensityJoiner.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/base/BamNMerIntensityParser.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/base/BaseClassifier.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/base/Classifier.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/base/NMer.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/base/SNPComparator.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/base/SamAlignmentExtractor.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/base/VCFParser.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/base/VariantAlignment.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/compression

Directory.

/trunk/Source/edu/utah/seq/compression/CompressFasta.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/data

Directory.

/trunk/Source/edu/utah/seq/data/Bam2Bar.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/data/BisSeqErrorAdder.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/data/ComparatorEnrichedRegionAbsoluteScore.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/data/ComparatorEnrichedRegionPosition.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/data/ComparatorEnrichedRegionScore.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/data/ComparatorInfoPoint.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/data/ComparatorPointAscendingScore.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/data/ComparatorPointDecendingScore.java Diff Switch to side-by-side view

<< < 1 .. 5 6 7 8 9 .. 35 > >> (Page 7 of 35)