USeq Source Code

Brought to you by: biotelerock, bmilash, elainegee, scourdy, tmosbruger

Commit [r2] Maximize Restore History

Initial commit after reorganizing USeq svn

Authored by: biotelerock 2012-10-31

Browse code at this revision

Parent: [r1]

Child: [r3]

<< < 1 .. 4 5 6 7 8 .. 35 > >> (Page 6 of 35)

added	/trunk/Source/edu/utah/seq/analysis/BisStat.java
added	/trunk/Source/edu/utah/seq/analysis/BisStatRegionMaker.java
added	/trunk/Source/edu/utah/seq/analysis/ChIPSeq.java
added	/trunk/Source/edu/utah/seq/analysis/DefinedEndScanSeqs.java
added	/trunk/Source/edu/utah/seq/analysis/DefinedRegionBisSeq.java
added	/trunk/Source/edu/utah/seq/analysis/DefinedRegionDifferentialSeq.java
added	/trunk/Source/edu/utah/seq/analysis/DefinedRegionScanSeqs.java
added	/trunk/Source/edu/utah/seq/analysis/EnrichedRegionMaker.java
added	/trunk/Source/edu/utah/seq/analysis/MethylatedBaseObservation.java
added	/trunk/Source/edu/utah/seq/analysis/MethylatedBaseObservationOneSample.java
added	/trunk/Source/edu/utah/seq/analysis/MultipleReplicaDefinedRegionScanSeqs.java
added	/trunk/Source/edu/utah/seq/analysis/MultipleReplicaScanSeqs.java
added	/trunk/Source/edu/utah/seq/analysis/OverdispersedRegionScanSeqs.java
added	/trunk/Source/edu/utah/seq/analysis/PeakShiftFinder.java
added	/trunk/Source/edu/utah/seq/analysis/QCSeqs.java
added	/trunk/Source/edu/utah/seq/analysis/RNAEditingScanSeqs.java
added	/trunk/Source/edu/utah/seq/analysis/RNASeq.java
added	/trunk/Source/edu/utah/seq/analysis/ScanSeqs.java
added	/trunk/Source/edu/utah/seq/analysis/ScoreMethylatedRegions.java
added	/trunk/Source/edu/utah/seq/analysis/SpliceJunction.java
added	/trunk/Source/edu/utah/seq/analysis/StrandedBisSeq.java
added	/trunk/Source/edu/utah/seq/analysis/SubPeakPicker.java
added	/trunk/Source/edu/utah/seq/analysis/multi
added	/trunk/Source/edu/utah/seq/analysis/multi/Condition.java
added	/trunk/Source/edu/utah/seq/analysis/multi/GeneCount.java

/trunk/Source/edu/utah/seq/analysis/BisStat.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/analysis/BisStatRegionMaker.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/analysis/ChIPSeq.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/analysis/DefinedEndScanSeqs.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/analysis/DefinedRegionBisSeq.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/analysis/DefinedRegionDifferentialSeq.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/analysis/DefinedRegionScanSeqs.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/analysis/EnrichedRegionMaker.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/analysis/MethylatedBaseObservation.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/analysis/MethylatedBaseObservationOneSample.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/analysis/MultipleReplicaDefinedRegionScanSeqs.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/analysis/MultipleReplicaScanSeqs.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/analysis/OverdispersedRegionScanSeqs.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/analysis/PeakShiftFinder.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/analysis/QCSeqs.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/analysis/RNAEditingScanSeqs.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/analysis/RNASeq.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/analysis/ScanSeqs.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/analysis/ScoreMethylatedRegions.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/analysis/SpliceJunction.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/analysis/StrandedBisSeq.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/analysis/SubPeakPicker.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/analysis/multi

Directory.

/trunk/Source/edu/utah/seq/analysis/multi/Condition.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/analysis/multi/GeneCount.java Diff Switch to side-by-side view

<< < 1 .. 4 5 6 7 8 .. 35 > >> (Page 6 of 35)