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From: <bjo...@us...> - 2009-03-24 13:56:12
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Revision: 1662
http://obi.svn.sourceforge.net/obi/?rev=1662&view=rev
Author: bjoernpeters
Date: 2009-03-24 13:49:13 +0000 (Tue, 24 Mar 2009)
Log Message:
-----------
Incorporation of Jennifer's sections into the release manuscript
Modified Paths:
--------------
trunk/docs/papers/release/Release-Manuscript-Master-bp.doc
Added Paths:
-----------
trunk/docs/papers/release/Clinical usecase.ppt
trunk/docs/papers/release/MS_AMA3.ppt
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From: <bjo...@us...> - 2009-03-24 05:16:11
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Revision: 1661
http://obi.svn.sourceforge.net/obi/?rev=1661&view=rev
Author: bjoernpeters
Date: 2009-03-24 05:15:57 +0000 (Tue, 24 Mar 2009)
Log Message:
-----------
Next version of release manuscript
Added Paths:
-----------
trunk/docs/papers/release/DT section for paper.doc
trunk/docs/papers/release/Release-Manuscript-Master-bp.doc
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From: <jen...@us...> - 2009-03-23 15:47:08
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Revision: 1660
http://obi.svn.sourceforge.net/obi/?rev=1660&view=rev
Author: jenfostel
Date: 2009-03-23 15:46:58 +0000 (Mon, 23 Mar 2009)
Log Message:
-----------
fixing role branch; adding process restrictions
Modified Paths:
--------------
trunk/docs/Role-CoreTerms-Vancouver-Final.ppt
trunk/src/ontology/branches/Role.owl
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From: <mco...@us...> - 2009-03-20 18:10:01
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Revision: 1659
http://obi.svn.sourceforge.net/obi/?rev=1659&view=rev
Author: mcourtot
Date: 2009-03-20 18:09:52 +0000 (Fri, 20 Mar 2009)
Log Message:
-----------
removed obvious declarations
Modified Paths:
--------------
trunk/src/ontology/branches/Role.owl
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From: <jam...@us...> - 2009-03-20 16:23:55
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Revision: 1658
http://obi.svn.sourceforge.net/obi/?rev=1658&view=rev
Author: jamesmalone
Date: 2009-03-20 16:23:46 +0000 (Fri, 20 Mar 2009)
Log Message:
-----------
moved taking sample from organism from role.owl to process branch file
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
trunk/src/ontology/branches/Role.owl
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From: <fgi...@us...> - 2009-03-20 12:00:53
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Revision: 1657
http://obi.svn.sourceforge.net/obi/?rev=1657&view=rev
Author: fgibson_sf
Date: 2009-03-20 12:00:21 +0000 (Fri, 20 Mar 2009)
Log Message:
-----------
moved N&S conditions on platform to N
Modified Paths:
--------------
trunk/src/ontology/branches/InstrumentAndPart.owl
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From: <al...@us...> - 2009-03-20 05:03:57
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Revision: 1656
http://obi.svn.sourceforge.net/obi/?rev=1656&view=rev
Author: alanr
Date: 2009-03-20 05:03:51 +0000 (Fri, 20 Mar 2009)
Log Message:
-----------
removed empty IAO_0000114
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <al...@us...> - 2009-03-20 04:33:25
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Revision: 1655
http://obi.svn.sourceforge.net/obi/?rev=1655&view=rev
Author: alanr
Date: 2009-03-20 04:33:23 +0000 (Fri, 20 Mar 2009)
Log Message:
-----------
bump to new version of IAO
Property Changed:
----------------
trunk/src/ontology/external/
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From: <al...@us...> - 2009-03-20 04:08:11
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Revision: 1654
http://obi.svn.sourceforge.net/obi/?rev=1654&view=rev
Author: alanr
Date: 2009-03-20 04:08:06 +0000 (Fri, 20 Mar 2009)
Log Message:
-----------
platform has_part some (bearer_of some (is_concretization_of some software)). Not has_part software. I'm dubious about it being a defined class, but fix that later
Modified Paths:
--------------
trunk/src/ontology/branches/InstrumentAndPart.owl
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From: <mco...@us...> - 2009-03-19 18:54:06
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Revision: 1653
http://obi.svn.sourceforge.net/obi/?rev=1653&view=rev
Author: mcourtot
Date: 2009-03-19 18:54:03 +0000 (Thu, 19 Mar 2009)
Log Message:
-----------
removed ghost rdf:Description of Class_2, Support vector machine, that may be due to class cloning?
Modified Paths:
--------------
trunk/src/ontology/branches/DataTransformation.owl
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From: <jen...@us...> - 2009-03-19 18:05:47
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Revision: 1652
http://obi.svn.sourceforge.net/obi/?rev=1652&view=rev
Author: jenfostel
Date: 2009-03-19 18:05:35 +0000 (Thu, 19 Mar 2009)
Log Message:
-----------
re-doing Role changes
Modified Paths:
--------------
trunk/src/ontology/branches/Role.owl
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From: <jam...@us...> - 2009-03-19 17:41:42
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Revision: 1651
http://obi.svn.sourceforge.net/obi/?rev=1651&view=rev
Author: jamesmalone
Date: 2009-03-19 17:41:31 +0000 (Thu, 19 Mar 2009)
Log Message:
-----------
added svm
Modified Paths:
--------------
trunk/src/ontology/branches/DataTransformation.owl
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From: <bjo...@us...> - 2009-03-19 17:11:20
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Revision: 1650
http://obi.svn.sourceforge.net/obi/?rev=1650&view=rev
Author: bjoernpeters
Date: 2009-03-19 17:11:01 +0000 (Thu, 19 Mar 2009)
Log Message:
-----------
added vaccination, immune response and immune response assay
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <mco...@us...> - 2009-03-19 16:44:58
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Revision: 1649
http://obi.svn.sourceforge.net/obi/?rev=1649&view=rev
Author: mcourtot
Date: 2009-03-19 16:44:44 +0000 (Thu, 19 Mar 2009)
Log Message:
-----------
reverted to revision 1637
Revision Links:
--------------
http://obi.svn.sourceforge.net/obi/?rev=1637&view=rev
Modified Paths:
--------------
trunk/src/ontology/branches/Role.owl
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From: <jen...@us...> - 2009-03-19 16:01:38
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Revision: 1648
http://obi.svn.sourceforge.net/obi/?rev=1648&view=rev
Author: jenfostel
Date: 2009-03-19 16:01:30 +0000 (Thu, 19 Mar 2009)
Log Message:
-----------
updated role branch
Modified Paths:
--------------
trunk/src/ontology/branches/Role.owl
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From: <mco...@us...> - 2009-03-18 19:10:29
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Revision: 1647
http://obi.svn.sourceforge.net/obi/?rev=1647&view=rev
Author: mcourtot
Date: 2009-03-18 19:10:18 +0000 (Wed, 18 Mar 2009)
Log Message:
-----------
added extract-core.lisp to the obi.asd
updated list of core terms based on Bjoern's list of IDs for PaPP
updated IAO_0000018 material entity to snap:MaterialEntity
Modified Paths:
--------------
trunk/src/tools/build/extract-core.lisp
trunk/src/tools/build/obi.asd
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From: <rbr...@us...> - 2009-03-18 19:07:05
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Revision: 1646
http://obi.svn.sourceforge.net/obi/?rev=1646&view=rev
Author: rbrinkman
Date: 2009-03-18 19:06:51 +0000 (Wed, 18 Mar 2009)
Log Message:
-----------
dibs!
Modified Paths:
--------------
trunk/docs/developer/DT/GenePatternUseCases.xls
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From: <jam...@us...> - 2009-03-18 17:02:20
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Revision: 1645
http://obi.svn.sourceforge.net/obi/?rev=1645&view=rev
Author: jamesmalone
Date: 2009-03-18 16:05:31 +0000 (Wed, 18 Mar 2009)
Log Message:
-----------
tidied up some terms in function branch that were obsolete and have been hanging around for a while.
Modified Paths:
--------------
trunk/src/ontology/branches/OBI-Function.owl
trunk/src/ontology/branches/Obsolete.owl
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From: <mco...@us...> - 2009-03-17 20:20:05
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Revision: 1644
http://obi.svn.sourceforge.net/obi/?rev=1644&view=rev
Author: mcourtot
Date: 2009-03-17 20:19:56 +0000 (Tue, 17 Mar 2009)
Log Message:
-----------
only 1 corresponding author
kept both emails though
Modified Paths:
--------------
trunk/docs/papers/owled2008/prepublication/owled.pdf
trunk/docs/papers/owled2008/prepublication/owled.tex
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From: <mco...@us...> - 2009-03-17 20:17:20
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Revision: 1643
http://obi.svn.sourceforge.net/obi/?rev=1643&view=rev
Author: mcourtot
Date: 2009-03-17 20:17:06 +0000 (Tue, 17 Mar 2009)
Log Message:
-----------
updated Frank's affiliation
Modified Paths:
--------------
trunk/docs/papers/owled2008/prepublication/owled.pdf
trunk/docs/papers/owled2008/prepublication/owled.tex
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From: <bjo...@us...> - 2009-03-17 04:11:05
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Revision: 1642
http://obi.svn.sourceforge.net/obi/?rev=1642&view=rev
Author: bjoernpeters
Date: 2009-03-17 04:10:37 +0000 (Tue, 17 Mar 2009)
Log Message:
-----------
Modified Paths:
--------------
trunk/src/ontology/branches/obi.pprj.template
Removed Paths:
-------------
trunk/src/ontology/branches/obi.pprj.annotations.templates
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From: <mco...@us...> - 2009-03-16 20:37:11
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Revision: 1641
http://obi.svn.sourceforge.net/obi/?rev=1641&view=rev
Author: mcourtot
Date: 2009-03-16 20:37:00 +0000 (Mon, 16 Mar 2009)
Log Message:
-----------
MC update
Modified Paths:
--------------
trunk/docs/developer/DT/GenePatternUseCases.xls
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From: <rbr...@us...> - 2009-03-16 18:26:13
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Revision: 1640
http://obi.svn.sourceforge.net/obi/?rev=1640&view=rev
Author: rbrinkman
Date: 2009-03-16 18:26:05 +0000 (Mon, 16 Mar 2009)
Log Message:
-----------
Tagged RBs definitions
Modified Paths:
--------------
trunk/docs/developer/DT/GenePatternUseCases.xls
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From: <jam...@us...> - 2009-03-16 17:20:06
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Revision: 1639
http://obi.svn.sourceforge.net/obi/?rev=1639&view=rev
Author: jamesmalone
Date: 2009-03-16 17:19:58 +0000 (Mon, 16 Mar 2009)
Log Message:
-----------
couple of extra done things and added MC to couple of terms.
Modified Paths:
--------------
trunk/docs/developer/DT/GenePatternUseCases.xls
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From: <mco...@us...> - 2009-03-15 07:04:29
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Revision: 1638
http://obi.svn.sourceforge.net/obi/?rev=1638&view=rev
Author: mcourtot
Date: 2009-03-15 07:04:02 +0000 (Sun, 15 Mar 2009)
Log Message:
-----------
asserted cell under material entity
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
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