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From: <jam...@us...> - 2009-05-11 14:37:23
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Revision: 1712
http://obi.svn.sourceforge.net/obi/?rev=1712&view=rev
Author: jamesmalone
Date: 2009-05-11 14:37:07 +0000 (Mon, 11 May 2009)
Log Message:
-----------
SOMs
Modified Paths:
--------------
trunk/src/ontology/branches/DataTransformation.owl
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From: <jam...@us...> - 2009-05-11 14:36:35
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Revision: 1711
http://obi.svn.sourceforge.net/obi/?rev=1711&view=rev
Author: jamesmalone
Date: 2009-05-11 14:36:30 +0000 (Mon, 11 May 2009)
Log Message:
-----------
more work...
Modified Paths:
--------------
trunk/docs/developer/DT/GenePatternUseCases.xls
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From: <jam...@us...> - 2009-05-11 13:09:30
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Revision: 1710
http://obi.svn.sourceforge.net/obi/?rev=1710&view=rev
Author: jamesmalone
Date: 2009-05-11 13:09:20 +0000 (Mon, 11 May 2009)
Log Message:
-----------
student's t test
Modified Paths:
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trunk/src/ontology/branches/DataTransformation.owl
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From: <jam...@us...> - 2009-05-11 12:45:31
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Revision: 1709
http://obi.svn.sourceforge.net/obi/?rev=1709&view=rev
Author: jamesmalone
Date: 2009-05-11 12:45:23 +0000 (Mon, 11 May 2009)
Log Message:
-----------
Started adding some more of Ryan's definitions to owl file
Modified Paths:
--------------
trunk/docs/developer/DT/GenePatternUseCases.xls
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From: <jam...@us...> - 2009-05-11 12:44:22
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Revision: 1708
http://obi.svn.sourceforge.net/obi/?rev=1708&view=rev
Author: jamesmalone
Date: 2009-05-11 12:44:19 +0000 (Mon, 11 May 2009)
Log Message:
-----------
Additional GenePattern instances for SVM and PeakMatching (from Ryan's definitions)
Modified Paths:
--------------
trunk/src/ontology/instances/dataTransformationInstances.owl
trunk/src/ontology/instances/softwareInstances.owl
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From: <jam...@us...> - 2009-05-11 12:40:33
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Revision: 1707
http://obi.svn.sourceforge.net/obi/?rev=1707&view=rev
Author: jamesmalone
Date: 2009-05-11 12:40:23 +0000 (Mon, 11 May 2009)
Log Message:
-----------
Continuation of GenePattern use case work. Adding Peak matching and SVM.
Modified Paths:
--------------
trunk/src/ontology/branches/DataTransformation.owl
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From: <jam...@us...> - 2009-05-11 10:16:29
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Revision: 1706
http://obi.svn.sourceforge.net/obi/?rev=1706&view=rev
Author: jamesmalone
Date: 2009-05-11 10:16:25 +0000 (Mon, 11 May 2009)
Log Message:
-----------
import instance for data transformation and software by default note, you need to include the ../instances folder and contents in your checkout from svn
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl.template
trunk/src/ontology/branches/obi.repository.template
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From: <rbr...@us...> - 2009-05-07 20:00:15
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Revision: 1705
http://obi.svn.sourceforge.net/obi/?rev=1705&view=rev
Author: rbrinkman
Date: 2009-05-07 19:59:57 +0000 (Thu, 07 May 2009)
Log Message:
-----------
Added acknowledgments section, as required by our funders
Modified Paths:
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trunk/docs/papers/ISMB_2009/Modeling biomedical experimental processes with OBI-1.doc
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From: <bjo...@us...> - 2009-04-24 22:42:41
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Revision: 1704
http://obi.svn.sourceforge.net/obi/?rev=1704&view=rev
Author: bjoernpeters
Date: 2009-04-24 22:42:32 +0000 (Fri, 24 Apr 2009)
Log Message:
-----------
Work on recombinant vector cloning and related terms with Kevin Clancy
Modified Paths:
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trunk/src/ontology/branches/Biomaterial.owl
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <bjo...@us...> - 2009-04-24 16:32:36
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Revision: 1703
http://obi.svn.sourceforge.net/obi/?rev=1703&view=rev
Author: bjoernpeters
Date: 2009-04-24 16:32:33 +0000 (Fri, 24 Apr 2009)
Log Message:
-----------
Worked on the 'blood sample' example, and created organismal sample role.
Modified Paths:
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trunk/src/ontology/branches/Biomaterial.owl
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
trunk/src/ontology/branches/Role.owl
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From: <bjo...@us...> - 2009-04-14 17:11:33
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Revision: 1702
http://obi.svn.sourceforge.net/obi/?rev=1702&view=rev
Author: bjoernpeters
Date: 2009-04-14 17:11:28 +0000 (Tue, 14 Apr 2009)
Log Message:
-----------
Manuscript updates - work in progress.
Modified Paths:
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trunk/docs/papers/release/Release-Manuscript-Master-shortened_hp.doc
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From: <bjo...@us...> - 2009-04-14 03:07:03
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Revision: 1701
http://obi.svn.sourceforge.net/obi/?rev=1701&view=rev
Author: bjoernpeters
Date: 2009-04-14 03:07:00 +0000 (Tue, 14 Apr 2009)
Log Message:
-----------
Release manuscript work in progress.
Added Paths:
-----------
trunk/docs/papers/release/Release-Manuscript-Master-shortened_hp.doc
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From: <mco...@us...> - 2009-04-11 06:47:54
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Revision: 1700
http://obi.svn.sourceforge.net/obi/?rev=1700&view=rev
Author: mcourtot
Date: 2009-04-11 06:47:50 +0000 (Sat, 11 Apr 2009)
Log Message:
-----------
added paper for ISMB 2009
Added Paths:
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trunk/docs/papers/ISMB_2009/
trunk/docs/papers/ISMB_2009/Modeling biomedical experimental processes with OBI-1.doc
trunk/docs/papers/ISMB_2009/ModelingWithOBI.pdf
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From: <bjo...@us...> - 2009-04-10 17:48:59
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Revision: 1699
http://obi.svn.sourceforge.net/obi/?rev=1699&view=rev
Author: bjoernpeters
Date: 2009-04-10 17:48:51 +0000 (Fri, 10 Apr 2009)
Log Message:
-----------
Poster submitted to ICBO
Added Paths:
-----------
trunk/docs/posters/
trunk/docs/posters/general_ICBO 2009/
trunk/docs/posters/general_ICBO 2009/OBI-ICBOposter-submitted.pdf
trunk/docs/posters/general_ICBO 2009/OBI-ICBOposterv3.doc
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From: <mco...@us...> - 2009-04-09 19:07:34
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Revision: 1698
http://obi.svn.sourceforge.net/obi/?rev=1698&view=rev
Author: mcourtot
Date: 2009-04-09 19:07:24 +0000 (Thu, 09 Apr 2009)
Log Message:
-----------
revision from Larisa (following SVN trouble)
Modified Paths:
--------------
trunk/docs/papers/release/OBI_SIG.doc
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From: <bjo...@us...> - 2009-04-09 17:13:06
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Revision: 1697
http://obi.svn.sourceforge.net/obi/?rev=1697&view=rev
Author: bjoernpeters
Date: 2009-04-09 17:13:05 +0000 (Thu, 09 Apr 2009)
Log Message:
-----------
Added vaccine, vaccine preparation, pathogen challenge and survival assessment as necessary for SIG paper.
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <fgi...@us...> - 2009-04-09 14:58:31
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Revision: 1696
http://obi.svn.sourceforge.net/obi/?rev=1696&view=rev
Author: fgibson_sf
Date: 2009-04-09 14:58:21 +0000 (Thu, 09 Apr 2009)
Log Message:
-----------
added some comments to OBI_SIG.doc
Modified Paths:
--------------
trunk/docs/papers/release/OBI_SIG.doc
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From: <bjo...@us...> - 2009-04-09 05:08:13
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Revision: 1695
http://obi.svn.sourceforge.net/obi/?rev=1695&view=rev
Author: bjoernpeters
Date: 2009-04-09 05:08:11 +0000 (Thu, 09 Apr 2009)
Log Message:
-----------
Completed first significant edit until 'Information content entity' section. HP will work on the front sections until this next, while I will continue working on the back part.
Modified Paths:
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trunk/docs/papers/release/Release-Manuscript-Master-shortened.doc
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From: <lso...@us...> - 2009-04-08 18:04:51
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Revision: 1694
http://obi.svn.sourceforge.net/obi/?rev=1694&view=rev
Author: lsoldatova
Date: 2009-04-08 18:04:42 +0000 (Wed, 08 Apr 2009)
Log Message:
-----------
Modified Paths:
--------------
trunk/docs/papers/release/OBI_SIG.doc
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From: <jam...@us...> - 2009-04-08 16:31:52
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Revision: 1693
http://obi.svn.sourceforge.net/obi/?rev=1693&view=rev
Author: jamesmalone
Date: 2009-04-08 16:31:50 +0000 (Wed, 08 Apr 2009)
Log Message:
-----------
abstract that was previously submitted to ismb sig 2008 (might be useful for future poster abstracts).
Added Paths:
-----------
trunk/docs/papers/ISMB 2008 abstract/
trunk/docs/papers/ISMB 2008 abstract/obi_final.pdf
trunk/docs/papers/ISMB 2008 abstract/obi_final.tex
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From: <dan...@us...> - 2009-04-08 13:48:04
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Revision: 1692
http://obi.svn.sourceforge.net/obi/?rev=1692&view=rev
Author: daniel_schober
Date: 2009-04-08 13:47:54 +0000 (Wed, 08 Apr 2009)
Log Message:
-----------
updated the svn instructions to reflect the fact that there are no separate .template files for unix/mac and PC anylonger
Modified Paths:
--------------
trunk/docs/developer/instructions-svn-local.txt
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From: <jam...@us...> - 2009-04-08 10:26:48
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Revision: 1691
http://obi.svn.sourceforge.net/obi/?rev=1691&view=rev
Author: jamesmalone
Date: 2009-04-08 10:26:41 +0000 (Wed, 08 Apr 2009)
Log Message:
-----------
JM review and edits
Modified Paths:
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trunk/docs/papers/release/OBI_SIG.doc
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From: <yon...@us...> - 2009-04-08 04:35:49
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Revision: 1690
http://obi.svn.sourceforge.net/obi/?rev=1690&view=rev
Author: yongqunh
Date: 2009-04-08 04:35:43 +0000 (Wed, 08 Apr 2009)
Log Message:
-----------
Updated Fig. 3 and made some other changes.
Modified Paths:
--------------
trunk/docs/papers/release/OBI_SIG.doc
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From: <bjo...@us...> - 2009-04-08 00:34:15
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Revision: 1689
http://obi.svn.sourceforge.net/obi/?rev=1689&view=rev
Author: bjoernpeters
Date: 2009-04-08 00:34:14 +0000 (Wed, 08 Apr 2009)
Log Message:
-----------
Modified Paths:
--------------
trunk/docs/papers/release/Clinical usecase.ppt
trunk/docs/papers/release/Release-Manuscript-Master-shortened.doc
Added Paths:
-----------
trunk/docs/papers/release/CoreTerms.png
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From: <mco...@us...> - 2009-04-07 21:37:09
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Revision: 1688
http://obi.svn.sourceforge.net/obi/?rev=1688&view=rev
Author: mcourtot
Date: 2009-04-07 21:37:08 +0000 (Tue, 07 Apr 2009)
Log Message:
-----------
review
Modified Paths:
--------------
trunk/docs/papers/release/OBI_SIG.doc
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