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From: <bjo...@us...> - 2009-06-11 17:08:56
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Revision: 1737
http://obi.svn.sourceforge.net/obi/?rev=1737&view=rev
Author: bjoernpeters
Date: 2009-06-11 17:08:50 +0000 (Thu, 11 Jun 2009)
Log Message:
-----------
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <al...@us...> - 2009-06-11 07:21:45
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Revision: 1736
http://obi.svn.sourceforge.net/obi/?rev=1736&view=rev
Author: alanr
Date: 2009-06-11 07:21:43 +0000 (Thu, 11 Jun 2009)
Log Message:
-----------
fix some protege lossage. AnnotationProperty->Data|ObjectProperty
Modified Paths:
--------------
trunk/src/ontology/branches/Role.owl
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From: <bjo...@us...> - 2009-06-10 17:51:50
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Revision: 1735
http://obi.svn.sourceforge.net/obi/?rev=1735&view=rev
Author: bjoernpeters
Date: 2009-06-10 17:51:40 +0000 (Wed, 10 Jun 2009)
Log Message:
-----------
Manuscript edits + revised definitions from the workshop
Modified Paths:
--------------
trunk/docs/papers/release/Release-Manuscript-Master-shortened.doc
Added Paths:
-----------
trunk/docs/papers/release/Notes during workshop.docx
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From: <bjo...@us...> - 2009-06-09 17:09:17
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Revision: 1734
http://obi.svn.sourceforge.net/obi/?rev=1734&view=rev
Author: bjoernpeters
Date: 2009-06-09 17:09:11 +0000 (Tue, 09 Jun 2009)
Log Message:
-----------
Modified Paths:
--------------
trunk/docs/papers/release/Release-Manuscript-Master-shortened.doc
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From: <bjo...@us...> - 2009-06-09 17:08:46
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Revision: 1733
http://obi.svn.sourceforge.net/obi/?rev=1733&view=rev
Author: bjoernpeters
Date: 2009-06-09 17:08:45 +0000 (Tue, 09 Jun 2009)
Log Message:
-----------
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
trunk/src/ontology/branches/Relations.owl
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From: <mco...@us...> - 2009-06-09 14:17:26
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Revision: 1732
http://obi.svn.sourceforge.net/obi/?rev=1732&view=rev
Author: mcourtot
Date: 2009-06-09 14:17:24 +0000 (Tue, 09 Jun 2009)
Log Message:
-----------
moved declaration of relations in Relations.owl file
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <mco...@us...> - 2009-06-02 23:52:40
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Revision: 1731
http://obi.svn.sourceforge.net/obi/?rev=1731&view=rev
Author: mcourtot
Date: 2009-06-02 23:52:39 +0000 (Tue, 02 Jun 2009)
Log Message:
-----------
removed extra return
Modified Paths:
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trunk/docs/papers/MIREOT_ICBO2009/ICBOCameraReady.doc
trunk/docs/papers/MIREOT_ICBO2009/ICBOCameraReady.pdf
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From: <mco...@us...> - 2009-06-02 18:52:03
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Revision: 1730
http://obi.svn.sourceforge.net/obi/?rev=1730&view=rev
Author: mcourtot
Date: 2009-06-02 18:51:54 +0000 (Tue, 02 Jun 2009)
Log Message:
-----------
updated sparql endpoint from Http://neurocommons.org:30322/sparql/ to http://sparql.obo.neurocommons.org/sparql/
Modified Paths:
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trunk/src/tools/build/external-templates.txt
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From: <bjo...@us...> - 2009-05-29 16:37:58
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Revision: 1729
http://obi.svn.sourceforge.net/obi/?rev=1729&view=rev
Author: bjoernpeters
Date: 2009-05-29 16:37:49 +0000 (Fri, 29 May 2009)
Log Message:
-----------
worked on blood sample / sample from organism as a more concrete use case of what we need to cover with 'sample / specimen' in general
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
trunk/src/ontology/branches/Role.owl
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From: <bjo...@us...> - 2009-05-28 17:47:21
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Revision: 1728
http://obi.svn.sourceforge.net/obi/?rev=1728&view=rev
Author: bjoernpeters
Date: 2009-05-28 17:47:13 +0000 (Thu, 28 May 2009)
Log Message:
-----------
protocol app call. worked on 'animal care' terms, and added example for animal food. started use of 'site' to say more about environment (temperature etc)
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <all...@us...> - 2009-05-28 15:00:41
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Revision: 1727
http://obi.svn.sourceforge.net/obi/?rev=1727&view=rev
Author: allysonlister
Date: 2009-05-28 15:00:28 +0000 (Thu, 28 May 2009)
Log Message:
-----------
Ally's edits. Ideally, I'd like to see an OWL file containing the individuals for the use cases. As for changes I've made, I've added / extended the discussion (but there's still lots of room for improvement) and made small grammatical changes elsewhere.
Modified Paths:
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trunk/docs/papers/release/Release-Manuscript-Master-shortened.doc
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From: <bjo...@us...> - 2009-05-26 15:42:57
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Revision: 1726
http://obi.svn.sourceforge.net/obi/?rev=1726&view=rev
Author: bjoernpeters
Date: 2009-05-26 15:42:48 +0000 (Tue, 26 May 2009)
Log Message:
-----------
Updated Figure 2 with ISMB paper + legend from MC
Modified Paths:
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trunk/docs/papers/release/Release-Manuscript-Master-shortened.doc
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From: <bjo...@us...> - 2009-05-22 23:46:09
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Revision: 1725
http://obi.svn.sourceforge.net/obi/?rev=1725&view=rev
Author: bjoernpeters
Date: 2009-05-22 23:46:03 +0000 (Fri, 22 May 2009)
Log Message:
-----------
edits on cloning processes (YACS, restriction based cloning etc., added enzymes)
Modified Paths:
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trunk/src/ontology/branches/Biomaterial.owl
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <mco...@us...> - 2009-05-21 21:45:09
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Revision: 1724
http://obi.svn.sourceforge.net/obi/?rev=1724&view=rev
Author: mcourtot
Date: 2009-05-21 21:45:00 +0000 (Thu, 21 May 2009)
Log Message:
-----------
added camera ready version
Added Paths:
-----------
trunk/docs/papers/MIREOT_ICBO2009/ICBOCameraReady.doc
trunk/docs/papers/MIREOT_ICBO2009/ICBOCameraReady.pdf
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From: <mco...@us...> - 2009-05-21 21:44:25
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Revision: 1723
http://obi.svn.sourceforge.net/obi/?rev=1723&view=rev
Author: mcourtot
Date: 2009-05-21 21:44:15 +0000 (Thu, 21 May 2009)
Log Message:
-----------
added figures created for Word camera ready version. (those where just plain text in tex)
Added Paths:
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trunk/docs/papers/MIREOT_ICBO2009/figs/sparql.png
trunk/docs/papers/MIREOT_ICBO2009/figs/sparql2.png
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From: <jen...@us...> - 2009-05-21 14:53:47
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Revision: 1722
http://obi.svn.sourceforge.net/obi/?rev=1722&view=rev
Author: jenfostel
Date: 2009-05-21 14:53:37 +0000 (Thu, 21 May 2009)
Log Message:
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worked on the results and one use case.
Modified Paths:
--------------
trunk/docs/papers/release/Release-Manuscript-Master-shortened.doc
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From: <bjo...@us...> - 2009-05-20 17:09:02
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Revision: 1721
http://obi.svn.sourceforge.net/obi/?rev=1721&view=rev
Author: bjoernpeters
Date: 2009-05-20 17:08:59 +0000 (Wed, 20 May 2009)
Log Message:
-----------
fixed page breaks
Modified Paths:
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trunk/docs/papers/release/Release-Manuscript-Master-shortened.doc
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From: <bjo...@us...> - 2009-05-20 17:06:52
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Revision: 1720
http://obi.svn.sourceforge.net/obi/?rev=1720&view=rev
Author: bjoernpeters
Date: 2009-05-20 17:06:24 +0000 (Wed, 20 May 2009)
Log Message:
-----------
Deleted intermediate version
Removed Paths:
-------------
trunk/docs/papers/release/Release-Manuscript-Master-shortened_hp_rb_bp.doc
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From: <bjo...@us...> - 2009-05-20 17:04:06
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Revision: 1719
http://obi.svn.sourceforge.net/obi/?rev=1719&view=rev
Author: bjoernpeters
Date: 2009-05-20 17:03:57 +0000 (Wed, 20 May 2009)
Log Message:
-----------
Removed intermediate versions, placed figures into subdirectory, updated author list, clarified table 1 example
Modified Paths:
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trunk/docs/papers/release/Release-Manuscript-Master-shortened.doc
Added Paths:
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trunk/docs/papers/release/Figures/Clinical usecase.ppt
trunk/docs/papers/release/Figures/CoreTerms.png
trunk/docs/papers/release/Figures/MS_AMA3.ppt
Removed Paths:
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trunk/docs/papers/release/Clinical usecase.ppt
trunk/docs/papers/release/CoreTerms.png
trunk/docs/papers/release/DT section for paper.doc
trunk/docs/papers/release/MS_AMA3.ppt
trunk/docs/papers/release/OBI_SIG.doc
trunk/docs/papers/release/Release-Manuscript-Master-shortened_hp.doc
trunk/docs/papers/release/Release-Manuscript-Master.doc
trunk/docs/papers/release/Use Case 3 - JF.doc
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From: <bjo...@us...> - 2009-05-20 03:27:20
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Revision: 1718
http://obi.svn.sourceforge.net/obi/?rev=1718&view=rev
Author: bjoernpeters
Date: 2009-05-20 03:27:12 +0000 (Wed, 20 May 2009)
Log Message:
-----------
Modified Paths:
--------------
trunk/docs/papers/release/Release-Manuscript-Master-shortened.doc
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From: <bjo...@us...> - 2009-05-20 01:17:13
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Revision: 1717
http://obi.svn.sourceforge.net/obi/?rev=1717&view=rev
Author: bjoernpeters
Date: 2009-05-20 01:17:05 +0000 (Wed, 20 May 2009)
Log Message:
-----------
Modified Paths:
--------------
trunk/docs/papers/release/Clinical usecase.ppt
trunk/docs/papers/release/Release-Manuscript-Master-shortened.doc
Added Paths:
-----------
trunk/docs/papers/release/Figures/
trunk/docs/papers/release/Figures/Core-Terms.pptx
trunk/docs/papers/release/Figures/core.jpg
trunk/docs/papers/release/Release-Manuscript-Master-shortened_hp_rb_bp.doc
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From: <lso...@us...> - 2009-05-13 17:09:11
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Revision: 1716
http://obi.svn.sourceforge.net/obi/?rev=1716&view=rev
Author: lsoldatova
Date: 2009-05-13 17:08:59 +0000 (Wed, 13 May 2009)
Log Message:
-----------
Modified Paths:
--------------
trunk/docs/papers/ISMB_2009/camera-ready-May13.doc
Added Paths:
-----------
trunk/docs/papers/ISMB_2009/ModelingWithOBI-camera-ready.pdf
Property Changed:
----------------
trunk/docs/papers/ISMB_2009/
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From: <lso...@us...> - 2009-05-13 14:59:03
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Revision: 1715
http://obi.svn.sourceforge.net/obi/?rev=1715&view=rev
Author: lsoldatova
Date: 2009-05-13 14:58:45 +0000 (Wed, 13 May 2009)
Log Message:
-----------
Added Paths:
-----------
trunk/docs/papers/ISMB_2009/camera-ready-May13.doc
Property Changed:
----------------
trunk/docs/papers/ISMB_2009/
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From: <dan...@us...> - 2009-05-12 17:07:39
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Revision: 1714
http://obi.svn.sourceforge.net/obi/?rev=1714&view=rev
Author: daniel_schober
Date: 2009-05-12 17:07:28 +0000 (Tue, 12 May 2009)
Log Message:
-----------
the obi use case ISMB paper with comments
Added Paths:
-----------
trunk/docs/papers/ISMB_2009/camera-ready_DS.doc
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From: <lso...@us...> - 2009-05-12 12:48:10
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Revision: 1713
http://obi.svn.sourceforge.net/obi/?rev=1713&view=rev
Author: lsoldatova
Date: 2009-05-12 12:47:54 +0000 (Tue, 12 May 2009)
Log Message:
-----------
Added Paths:
-----------
trunk/docs/papers/ISMB_2009/camera-ready.doc
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