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From: <al...@us...> - 2009-03-15 06:06:10
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Revision: 1637
http://obi.svn.sourceforge.net/obi/?rev=1637&view=rev
Author: alanr
Date: 2009-03-15 06:05:53 +0000 (Sun, 15 Mar 2009)
Log Message:
-----------
Banish IAO_0000018, replacing with BFO defined material entity
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
trunk/src/ontology/branches/InstrumentAndPart.owl
trunk/src/ontology/branches/OBI-Function.owl
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
trunk/src/ontology/branches/Quality.owl
trunk/src/ontology/branches/Relations.owl
trunk/src/ontology/branches/Role.owl
trunk/src/ontology/branches/external.owl
trunk/src/ontology/branches/externalDerived.owl
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From: <mco...@us...> - 2009-03-14 18:58:22
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Revision: 1636
http://obi.svn.sourceforge.net/obi/?rev=1636&view=rev
Author: mcourtot
Date: 2009-03-14 18:58:21 +0000 (Sat, 14 Mar 2009)
Log Message:
-----------
added AR affiliation
Modified Paths:
--------------
trunk/docs/papers/owled2008/prepublication/owled.pdf
trunk/docs/papers/owled2008/prepublication/owled.tex
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From: <mco...@us...> - 2009-03-13 22:40:26
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Revision: 1635
http://obi.svn.sourceforge.net/obi/?rev=1635&view=rev
Author: mcourtot
Date: 2009-03-13 22:40:16 +0000 (Fri, 13 Mar 2009)
Log Message:
-----------
last typos. MC's phone number
Modified Paths:
--------------
trunk/docs/papers/owled2008/prepublication/owled.pdf
trunk/docs/papers/owled2008/prepublication/owled.tex
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From: <mco...@us...> - 2009-03-13 22:32:40
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Revision: 1634
http://obi.svn.sourceforge.net/obi/?rev=1634&view=rev
Author: mcourtot
Date: 2009-03-13 22:32:34 +0000 (Fri, 13 Mar 2009)
Log Message:
-----------
use url package for footnotes or they are cut in 2 columns format
Modified Paths:
--------------
trunk/docs/papers/owled2008/prepublication/owled.pdf
trunk/docs/papers/owled2008/prepublication/owled.tex
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From: <mco...@us...> - 2009-03-13 22:25:08
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Revision: 1633
http://obi.svn.sourceforge.net/obi/?rev=1633&view=rev
Author: mcourtot
Date: 2009-03-13 22:24:50 +0000 (Fri, 13 Mar 2009)
Log Message:
-----------
added high res pictures, full affiliation addresses, disclosure statement
Modified Paths:
--------------
trunk/docs/papers/owled2008/prepublication/owled.pdf
trunk/docs/papers/owled2008/prepublication/owled.tex
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From: <mco...@us...> - 2009-03-13 22:24:15
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Revision: 1632
http://obi.svn.sourceforge.net/obi/?rev=1632&view=rev
Author: mcourtot
Date: 2009-03-13 22:24:03 +0000 (Fri, 13 Mar 2009)
Log Message:
-----------
high resolution pictures (300dpi, tiff format) for submission. png version committed for use in the tex manuscript
Added Paths:
-----------
trunk/docs/papers/owled2008/prepublication/inference.png
trunk/docs/papers/owled2008/prepublication/inference.tiff
trunk/docs/papers/owled2008/prepublication/xmlcomments.png
trunk/docs/papers/owled2008/prepublication/xmlcomments.tiff
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From: <bjo...@us...> - 2009-03-13 16:36:15
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Revision: 1631
http://obi.svn.sourceforge.net/obi/?rev=1631&view=rev
Author: bjoernpeters
Date: 2009-03-13 16:36:06 +0000 (Fri, 13 Mar 2009)
Log Message:
-----------
added the assertion 'cell culture' as a material entity
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
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From: <al...@us...> - 2009-03-13 13:01:26
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Revision: 1630
http://obi.svn.sourceforge.net/obi/?rev=1630&view=rev
Author: alanr
Date: 2009-03-13 13:01:10 +0000 (Fri, 13 Mar 2009)
Log Message:
-----------
newly released version with material entity
Modified Paths:
--------------
trunk/src/ontology/external/bfo11.owl
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From: <mco...@us...> - 2009-03-12 20:44:40
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Revision: 1629
http://obi.svn.sourceforge.net/obi/?rev=1629&view=rev
Author: mcourtot
Date: 2009-03-12 20:44:33 +0000 (Thu, 12 Mar 2009)
Log Message:
-----------
removed comments
expanded acknowledgements as per Ryan's request
Modified Paths:
--------------
trunk/docs/papers/owled2008/prepublication/owled.pdf
trunk/docs/papers/owled2008/prepublication/owled.tex
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From: <mco...@us...> - 2009-03-12 19:07:56
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Revision: 1628
http://obi.svn.sourceforge.net/obi/?rev=1628&view=rev
Author: mcourtot
Date: 2009-03-12 19:07:42 +0000 (Thu, 12 Mar 2009)
Log Message:
-----------
removed imports
Modified Paths:
--------------
trunk/src/ontology/branches/DataTransformation.owl
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From: <jam...@us...> - 2009-03-12 17:35:30
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Revision: 1627
http://obi.svn.sourceforge.net/obi/?rev=1627&view=rev
Author: jamesmalone
Date: 2009-03-12 17:35:11 +0000 (Thu, 12 Mar 2009)
Log Message:
-----------
oh my god I wrote 'colors' in my commit log. That is wrong. I have been brain washed. "COLOURS" it should have read. I'm English and proud...
Modified Paths:
--------------
trunk/docs/developer/DT/GenePatternUseCases.xls
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From: <jam...@us...> - 2009-03-12 17:32:36
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Revision: 1626
http://obi.svn.sourceforge.net/obi/?rev=1626&view=rev
Author: jamesmalone
Date: 2009-03-12 17:32:30 +0000 (Thu, 12 Mar 2009)
Log Message:
-----------
colors make it easier...
Modified Paths:
--------------
trunk/docs/developer/DT/GenePatternUseCases.xls
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From: <jam...@us...> - 2009-03-12 17:32:25
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Revision: 1625
http://obi.svn.sourceforge.net/obi/?rev=1625&view=rev
Author: jamesmalone
Date: 2009-03-12 17:32:16 +0000 (Thu, 12 Mar 2009)
Log Message:
-----------
more DT instances and linked GenePattern software instances:
CART
CARTXValidation
KNN
KNNXValidation
Modified Paths:
--------------
trunk/src/ontology/instances/dataTransformationInstances.owl
trunk/src/ontology/instances/softwareInstances.owl
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From: <jam...@us...> - 2009-03-12 17:30:22
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Revision: 1624
http://obi.svn.sourceforge.net/obi/?rev=1624&view=rev
Author: jamesmalone
Date: 2009-03-12 17:30:07 +0000 (Thu, 12 Mar 2009)
Log Message:
-----------
updating status of completed items
Modified Paths:
--------------
trunk/docs/developer/DT/GenePatternUseCases.xls
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From: <jam...@us...> - 2009-03-12 17:12:20
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Revision: 1623
http://obi.svn.sourceforge.net/obi/?rev=1623&view=rev
Author: jamesmalone
Date: 2009-03-12 17:12:12 +0000 (Thu, 12 Mar 2009)
Log Message:
-----------
more work on genepattern use case
addition of knn
Modified Paths:
--------------
trunk/src/ontology/branches/DataTransformation.owl
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From: <jen...@us...> - 2009-03-12 16:25:02
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Revision: 1622
http://obi.svn.sourceforge.net/obi/?rev=1622&view=rev
Author: jenfostel
Date: 2009-03-12 16:24:51 +0000 (Thu, 12 Mar 2009)
Log Message:
-----------
added Role Branch Core Terms from Workshop
Added Paths:
-----------
trunk/docs/Role-CoreTerms-Vancouver-Final.ppt
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From: <jam...@us...> - 2009-03-12 15:08:31
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Revision: 1621
http://obi.svn.sourceforge.net/obi/?rev=1621&view=rev
Author: jamesmalone
Date: 2009-03-12 15:08:07 +0000 (Thu, 12 Mar 2009)
Log Message:
-----------
remove imports
Modified Paths:
--------------
trunk/src/ontology/branches/DataTransformation.owl
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From: <jam...@us...> - 2009-03-12 15:05:35
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Revision: 1620
http://obi.svn.sourceforge.net/obi/?rev=1620&view=rev
Author: jamesmalone
Date: 2009-03-12 15:05:23 +0000 (Thu, 12 Mar 2009)
Log Message:
-----------
decision trees and CART added
Modified Paths:
--------------
trunk/src/ontology/branches/DataTransformation.owl
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From: <mco...@us...> - 2009-03-11 23:22:07
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Revision: 1619
http://obi.svn.sourceforge.net/obi/?rev=1619&view=rev
Author: mcourtot
Date: 2009-03-11 23:21:59 +0000 (Wed, 11 Mar 2009)
Log Message:
-----------
added import of obi-quick-id which has a description in PaPP file to avoid OWL full
Modified Paths:
--------------
trunk/src/ontology/branches/obil.owl
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From: <mco...@us...> - 2009-03-11 23:19:43
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Revision: 1618
http://obi.svn.sourceforge.net/obi/?rev=1618&view=rev
Author: mcourtot
Date: 2009-03-11 23:19:33 +0000 (Wed, 11 Mar 2009)
Log Message:
-----------
removed stray annotation to non existant class, OBI_0000687, averaged value
there is average value OBI_0000679, probably wrong edit when cloning the class (I already removed some previously)
caused OBI to be owl full
Modified Paths:
--------------
trunk/src/ontology/branches/DigitalEntityPlus.owl
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From: <mco...@us...> - 2009-03-11 22:49:40
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Revision: 1617
http://obi.svn.sourceforge.net/obi/?rev=1617&view=rev
Author: mcourtot
Date: 2009-03-11 22:49:20 +0000 (Wed, 11 Mar 2009)
Log Message:
-----------
semi colons for keywords
Modified Paths:
--------------
trunk/docs/papers/owled2008/prepublication/owled.pdf
trunk/docs/papers/owled2008/prepublication/owled.tex
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From: <mco...@us...> - 2009-03-11 22:16:35
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Revision: 1616
http://obi.svn.sourceforge.net/obi/?rev=1616&view=rev
Author: mcourtot
Date: 2009-03-11 22:16:18 +0000 (Wed, 11 Mar 2009)
Log Message:
-----------
getting there!
Modified Paths:
--------------
trunk/docs/papers/owled2008/prepublication/owled.pdf
trunk/docs/papers/owled2008/prepublication/owled.tex
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From: <jam...@us...> - 2009-03-11 17:40:18
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Revision: 1615
http://obi.svn.sourceforge.net/obi/?rev=1615&view=rev
Author: jamesmalone
Date: 2009-03-11 17:40:04 +0000 (Wed, 11 Mar 2009)
Log Message:
-----------
addition of decision tree induction objective
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <jam...@us...> - 2009-03-11 17:27:38
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Revision: 1614
http://obi.svn.sourceforge.net/obi/?rev=1614&view=rev
Author: jamesmalone
Date: 2009-03-11 17:27:24 +0000 (Wed, 11 Mar 2009)
Log Message:
-----------
Addition of PCA instances and correction to knn.
Modified Paths:
--------------
trunk/src/ontology/instances/dataTransformationInstances.owl
trunk/src/ontology/instances/softwareInstances.owl
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From: <al...@us...> - 2009-03-11 05:54:45
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Revision: 1613
http://obi.svn.sourceforge.net/obi/?rev=1613&view=rev
Author: alanr
Date: 2009-03-11 05:54:36 +0000 (Wed, 11 Mar 2009)
Log Message:
-----------
does a passable version. No core properties, no axioms.
Has proper base, about, and protege language
Modified Paths:
--------------
trunk/src/tools/build/extract-core.lisp
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